About   Help   FAQ
Trgv5 Gene Detail
Summary
  • Symbol
    Trgv5
  • Name
    T cell receptor gamma, variable 5
  • Synonyms
    Tcrg-V5
  • Feature Type
    gene segment
  • IDs
    MGI:98635
    NCBI Gene: 21639
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:19192278-19192725 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 6.89 cM
Strain
Comparison
more
  • SNPs within 2kb
    16 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_98635
gene segment Chr13:19192278-19192725 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002513
gene segment Chr13:16302657-16303104 (+)
A/J MGP_AJ_G0002486
gene segment Chr13:16085181-16085628 (+)
AKR/J MGP_AKRJ_G0002472
gene segment Chr13:16279860-16280307 (+)
BALB/cJ MGP_BALBcJ_G0002482
gene segment Chr13:16049723-16050170 (+)
C3H/HeJ MGP_C3HHeJ_G0002459
gene segment Chr13:16402330-16402777 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002607
gene segment Chr13:16999804-17000251 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002205
gene segment Chr13:14540498-14540945 (+)
CAST/EiJ MGP_CASTEiJ_G0002421
gene segment Chr13:16144538-16144981 (+)
CBA/J MGP_CBAJ_G0002450
gene segment Chr13:17563370-17563817 (+)
DBA/2J MGP_DBA2J_G0002456
gene segment Chr13:15662967-15663414 (+)
FVB/NJ MGP_FVBNJ_G0002469
gene segment Chr13:15351206-15351653 (+)
LP/J MGP_LPJ_G0002511
gene segment Chr13:16588953-16589400 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002439
gene segment Chr13:17960705-17961152 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002602
gene segment Chr13:16092334-16092781 (+)
PWK/PhJ MGP_PWKPhJ_G0002396
gene segment Chr13:15700580-15701027 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002333
gene segment Chr13:15215334-15215781 (+)
WSB/EiJ MGP_WSBEiJ_G0002452
gene segment Chr13:16126424-16126871 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 21639 NCBI Gene Model | MGI Sequence Detail 448 C57BL/6J ±  kb
transcript M71214 GenBank | EMBL | DDBJ | MGI Sequence Detail 365 C57BL/6J x C3H/HeJ  
polypeptide A0A0G2JGV5 UniProt | EBI | MGI Sequence Detail 113 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 10
    Genomic 5
    cDNA 3
    Other 2
Other
Accession IDs
less
MGD-MRK-14927
References
more
  • Summaries
    All 18
    Developmental Gene Expression 4
    Gene Ontology 2
  • Earliest
    J:8286 Garman RD, et al., Diversity, rearrangement, and expression of murine T cell gamma genes. Cell. 1986 Jun 6;45(5):733-42
  • Latest
    J:207537 Nakamura K, et al., Differential requirement for CCR4 in the maintenance but not establishment of the invariant Vgamma5(+) dendritic epidermal T-cell pool. PLoS One. 2013;8(9):e74019

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
10/08/2019
MGI 6.14
The Jackson Laboratory