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Trbv17 Gene Detail
Summary
  • Symbol
    Trbv17
  • Name
    T cell receptor beta, variable 17
  • Synonyms
    Gm16779
  • Feature Type
    gene segment
  • IDs
    MGI:98610
    NCBI Gene: 100124681
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:41163092-41163556 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 19.25 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    42 from dbSNP Build 142
  • Strain Annotations
    17
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_98610
gene segment Chr6:41163062-41163556 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002589
gene segment Chr6:39649143-39649637 (+)
A/J MGP_AJ_G0002560
gene segment Chr6:37917705-37918199 (+)
AKR/J MGP_AKRJ_G0002551
gene segment Chr6:39123847-39124341 (+)
BALB/cJ MGP_BALBcJ_G0002546
gene segment Chr6:38135279-38135773 (+)
C3H/HeJ MGP_C3HHeJ_G0002513
gene segment Chr6:39152228-39152722 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002687
gene segment Chr6:40627213-40627707 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002256
gene segment Chr6:35710696-35711189 (+)
CAST/EiJ MGP_CASTEiJ_G0002498
gene segment Chr6:39037029-39037523 (+)
CBA/J MGP_CBAJ_G0002512
gene segment Chr6:42279899-42280393 (+)
DBA/2J MGP_DBA2J_G0002516
gene segment Chr6:37732806-37733300 (+)
FVB/NJ no annotation
LP/J MGP_LPJ_G0002595
gene segment Chr6:39654409-39654903 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002519
gene segment Chr6:44526161-44526655 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002697
gene segment Chr6:39100044-39100538 (+)
PWK/PhJ MGP_PWKPhJ_G0002458
gene segment Chr6:37358347-37358840 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002410
gene segment Chr6:38797057-38797551 (+)
WSB/EiJ MGP_WSBEiJ_G0002514
gene segment Chr6:39029568-39030059 (+)



Homology
less
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic 100124681 NCBI Gene Model | MGI Sequence Detail 465 C57BL/6J ±  kb
transcript BY102299 GenBank | EMBL | DDBJ | MGI Sequence Detail 341 C57BL/6J  
polypeptide A0A140T8P8 UniProt | EBI | MGI Sequence Detail 114 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 7
    Genomic 4
    cDNA 3
Other
Accession IDs
less
MGD-MRK-14902, MGI:4439703
References
more
  • Summaries
    All 12
    Gene Ontology 1
  • Earliest
    J:8182 Behlke MA, et al., Murine T-cell receptor mutants with deletions of beta-chain variable region genes. Proc Natl Acad Sci U S A. 1986 Feb;83(3):767-71
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
02/18/2020
MGI 6.14
The Jackson Laboratory