Sox13
Gene Detail

Symbol Name ID

Sox13 SRY-box containing gene 13 MGI:98361

Feature Type

protein coding gene

Genetic Map

Chromosome 1

57.91 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr1:133382303-133424377 bp, - strand From VEGA annotation of GRCm38   42075 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:4159  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Sox13

Human homologs

Human Homolog		SOX13, SRY (sex determining region Y)-box 13
NCBI Gene ID		9580
neXtProt AC		NX_Q9UN79
Human Synonyms		ICA12, Sox-13
Human Chr (Location)		1q32; chr1:204042246-204096871 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(40) : Targeted(3) Gene trapped(37)
 

Mice homozygous for a knock-out allele display impaired development of gamma-delta T cells and severe postnatal growth defects.

 

Gene Ontology (GO) classifications

All GO classifications: (5 annotations)

Process	regulation of transcription, DNA-dependent, transcription, DNA-dependent
Component	nucleus
Function	DNA binding, sequence-specific DNA binding

External Resources: FuncBase

Expression

Literature Summary: (15 records)
Data Summary: Results (85)    Tissues (78)    Images (9)
Theiler Stages: 2, 3, 4, 5, 17, 18, 19, 20, 21, 22, 23, 26, 28

Assay Type	Results
RNA in situ	60
Northern blot	6
RT-PCR	19

cDNA source data(57)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(60) cDNA(57) Primer pair(3)
Microarray probesets(3)

Other database links

VEGA Gene Model	OTTMUSG00000026807 (Evidence)
Ensembl Gene Model	ENSMUSG00000070643 (Evidence)
Entrez Gene	20668 (Evidence)
UniGene	8575
DFCI	TC1581842, TC1645166
DoTS	DT.40177426, DT.97362239
NIA Mouse Gene Index	U021771
Consensus CDS Project	CCDS48363.1
International Mouse Knockout Project Status	Sox13

Sequences

Length	Strain/Species
genomic	OTTMUSG00000026807	VEGA Gene Model | MGI Sequence Detail	42075	C57BL/6J
transcript	OTTMUST00000066298	VEGA | MGI Sequence Detail	3693	Not Applicable
polypeptide	OTTMUSP00000033207	VEGA | MGI Sequence Detail	595	Not Applicable

All sequences(35) RefSeq(2) UniProt(2)

Polymorphisms

SNPs(321 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR009071	High mobility group, superfamily
Protein Ontology	PR:000015421	transcription factor SOX-13

References

(Earliest) J:4011 Wright EM, et al., Seven new members of the Sox gene family expressed during mouse development. Nucleic Acids Res. 1993 Feb 11;21(3):744
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(49)

Other accession IDs

MGD-MRK-14500, MGI:2138077, MGI:2138583, MGI:2138597