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Snrpd2 Gene Detail
Summary
  • Symbol
    Snrpd2
  • Name
    small nuclear ribonucleoprotein D2
  • Synonyms
    1810009A06Rik, SMD2
  • Feature Type
    protein coding gene
  • IDs
    MGI:98345
    NCBI Gene: 107686
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:19149445-19152734 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 9.46 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    47 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_98345
protein coding gene Chr7:19149445-19153542 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031762
protein coding gene Chr7:17111029-17116946 (+)
A/J MGP_AJ_G0031738
protein coding gene Chr7:16791637-16795456 (+)
AKR/J MGP_AKRJ_G0031664
protein coding gene Chr7:17248623-17252442 (+)
BALB/cJ MGP_BALBcJ_G0031743
protein coding gene Chr7:16983691-16987510 (+)
C3H/HeJ MGP_C3HHeJ_G0031465
protein coding gene Chr7:17512837-17517423 (+)
C57BL/6NJ MGP_C57BL6NJ_G0032209
protein coding gene Chr7:17998573-18002393 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029275
protein coding gene Chr7:18436916-18440772 (+)
CAST/EiJ MGP_CASTEiJ_G0030808
protein coding gene Chr7:13910159-13914368 (+)
CBA/J MGP_CBAJ_G0031427
protein coding gene Chr7:18652313-18658537 (+)
DBA/2J MGP_DBA2J_G0031582
protein coding gene Chr7:16726647-16730466 (+)
FVB/NJ MGP_FVBNJ_G0031534
protein coding gene Chr7:16590569-16594388 (+)
LP/J MGP_LPJ_G0031665
protein coding gene Chr7:17451958-17455767 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031570
protein coding gene Chr7:18508447-18513612 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0032237
protein coding gene Chr7:16858591-16862410 (+)
PWK/PhJ MGP_PWKPhJ_G0030532
protein coding gene Chr7:13815309-13819487 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030359
protein coding gene Chr7:11545463-11556572 (+)
WSB/EiJ MGP_WSBEiJ_G0030908
protein coding gene Chr7:17065114-17068933 (+)



Homology
more
  • Human Ortholog
    SNRPD2, small nuclear ribonucleoprotein D2 polypeptide
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SNRPD2, small nuclear ribonucleoprotein D2 polypeptide
    Orthology source: HomoloGene, HGNC
  • Synonyms
    Sm-D2, SMD2, SNRPD1
  • Links
    NCBI Gene ID: 6633
    neXtProt AC: NX_P62316
    UniProt: P62316

  • Chr Location
    19q13.32; chr19:45687454-45692316 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 107686 NCBI Gene Model | MGI Sequence Detail 3290 C57BL/6J ±  kb
transcript NM_026943 RefSeq | MGI Sequence Detail 508 C57BL/6  
polypeptide P62317 UniProt | EBI | MGI Sequence Detail 118 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 187
    cDNA 187

    Microarray probesets 6
Other
Accession IDs
less
MGD-MRK-14475, MGI:1916357
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 7
  • Earliest
    J:1159 Mitsuda T, et al., The murine Sm-D autoantigen: multiple genes, genetic polymorphism, evolutionary conservation and lack of intervening sequences in the coding region. J Autoimmun. 1992 Jun;5(3):277-87
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
02/18/2020
MGI 6.14
The Jackson Laboratory