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Snrpd2 Gene Detail
Summary
  • Symbol
    Snrpd2
  • Name
    small nuclear ribonucleoprotein D2
  • Synonyms
    1810009A06Rik, SMD2
  • Feature Type
    protein coding gene
  • IDs
    MGI:98345
    NCBI Gene: 107686
Location & Maps
more
  • Sequence Map
    Chr7:19149722-19153542 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      3821 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 9.46 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    SNRPD2, small nuclear ribonucleoprotein D2 polypeptide
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SNRPD2, small nuclear ribonucleoprotein D2 polypeptide
    Orthology source: HGNC, HomoloGene
  • Synonyms
    Sm-D2, SMD2, SNRPD1
  • Links
    NCBI Gene ID: 6633
    neXtProt AC: NX_P62316

  • Chr Location
    19q13.2; chr19:45687454-45692311 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    9
  • Gene trapped
    7
  • Targeted
    2
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000029193 VEGA Gene Model | MGI Sequence Detail 3821 C57BL/6J ±  kb
transcript OTTMUST00000072392 VEGA | MGI Sequence Detail 1420 Not Applicable  
polypeptide OTTMUSP00000037252 VEGA | MGI Sequence Detail 118 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    52 from dbSNP Build 142
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000015344 small nuclear ribonucleoprotein Sm D2
  • InterPro Domains
    IPR010920 LSM domain
    IPR001163 LSM domain, eukaryotic/archaea-type
    IPR027248 Small nuclear ribonucleoprotein Sm D2
Molecular
Reagents
less
  • All nucleic 186
    cDNA 186

    Microarray probesets 6
Other
Accession IDs
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MGD-MRK-14475, MGI:1916357
References
more
  • Summaries
    All 32
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 7
  • Earliest
    J:1159 Mitsuda T, et al., The murine Sm-D autoantigen: multiple genes, genetic polymorphism, evolutionary conservation and lack of intervening sequences in the coding region. J Autoimmun. 1992 Jun;5(3):277-87
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory