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Snrnp70
Gene Detail
 Symbol
Name
ID
Snrnp70
small nuclear ribonucleoprotein 70 (U1)
MGI:98341
Synonyms 2700022N21Rik, 3200002N22Rik, Rnulp70, Srnp70, U1-70
Feature Type protein coding gene
Genetic Map
Chromosome 7
29.28 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr7:45376454-45395647 bp, - strand
From NCBI annotation of GRCm38

  19194 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:20672  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Gene Tree: Snrnp70

Human
homologs
Human Homolog SNRNP70, small nuclear ribonucleoprotein 70kDa (U1)
NCBI Gene ID 6625
neXtProt AC  NX_P08621
Human Synonyms  RNPU1Z, RPU1, Snp1, SNRP70, U170K, U1-70K, U1AP, U1RNP
Human Chr (Location)  19q13.3; chr19:49085208-49108613 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(60) : Gene trapped(58) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Snrnp70 interacts with 16 markers (Mir136, Mir292, Mir293, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process mRNA splicing, via spliceosome, regulation of RNA splicing
Component nucleus, ribonucleoprotein complex, ...
Function nucleic acid binding, nucleotide binding, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (48)    Tissues (42)    Images (7)
Theiler Stages: 20, 21, 27
Assay TypeResults
RNA in situ 46
RT-PCR 2
cDNA source data(169)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(175) Genomic(2) cDNA(172) Primer pair(1)
Microarray probesets(5)
Other database
links
Ensembl Gene ModelENSMUSG00000063511 (Evidence)
Entrez Gene20637 (Evidence)
UniGene216386
DFCITC1575389, TC1600683, TC1602891, TC1603107, TC1606337, TC1657045, TC1698698
DoTSDT.101317421, DT.101390019, DT.101403897, DT.101738902, DT.97387615
NIA Mouse Gene IndexU028526
Consensus CDS ProjectCCDS21240.1
International Mouse Knockout Project StatusSnrnp70
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 20637 NCBI Gene Model | MGI Sequence Detail 19194 C57BL/6J ±  kb
transcript NM_009224 RefSeq | MGI Sequence Detail 1639 C57BL/6 
polypeptide Q62376 UniProt | EBI | MGI Sequence Detail 448 Not Applicable 

For the selected sequences
All sequences(61) RefSeq(10) UniProt(6)
Polymorphisms RFLP(2) : SNPs within 2kb(165 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012677 Nucleotide-binding, alpha-beta plait
InterPro IPR000504 RNA recognition motif domain
InterPro IPR022023 U1 small nuclear ribonucleoprotein of 70kDa N-terminal
Protein Ontology PR:000015338 U1 small nuclear ribonucleoprotein 70 kDa
Graphical View of Protein Domain Structure
References (Earliest) J:23362 Query CC, et al., A human autoimmune protein associated with U1 RNA contains a region of homology that is cross-reactive with retroviral p30gag antigen. Cell. 1987 Oct 23;51(2):211-20
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(49)
Other
accession IDs
MGD-MRK-14003, MGD-MRK-14471, MGD-MRK-14602, MGI:1913569, MGI:1919842, MGI:2141914, MGI:2142381

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory