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Rps16
Gene Detail
 Symbol
Name
ID
Rps16
ribosomal protein S16
MGI:98118
Feature Type protein coding gene
Genetic Map
Chromosome 7
16.70 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr7:28350652-28352696 bp, + strand
From VEGA annotation of GRCm38

  2045 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:794  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: ribosomal protein, S9p/S9a/S16e/organellar S9 types
Gene Tree: Rps16

Human
homologs
Human Homolog RPS16, ribosomal protein S16
NCBI Gene ID 6217
neXtProt AC  NX_P62249
Human Synonyms  S16
Human Chr (Location)  19q13.1; chr19:39433207-39436020 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(47) : Gene trapped(46) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Rps16 interacts with 3 markers (Mir325, Mir876, Mir1843b)
Gene Ontology
(GO)
classifications
All GO classifications: (14 annotations)
Process ribosomal small subunit biogenesis, rRNA processing, ...
Component cytosolic small ribosomal subunit, extracellular vesicular exosome, ...
Function poly(A) RNA binding, RNA binding, ...
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (5)    Tissues (5)    Images (1)
Theiler Stages: 1, 2, 3, 5, 28
Assay TypeResults
RT-PCR 5
cDNA source data(21)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(27) Genomic(5) cDNA(21) Primer pair(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000022980 (Evidence)
Ensembl Gene ModelENSMUSG00000037563 (Evidence)
Entrez Gene20055 (Evidence)
DFCITC1573759
DoTSDT.101167739, DT.101198042, DT.101741082, DT.94412861
Consensus CDS ProjectCCDS39858.1
International Mouse Knockout Project StatusRps16
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022980 VEGA Gene Model | MGI Sequence Detail 2045 C57BL/6J ±  kb
transcript OTTMUST00000055308 VEGA | MGI Sequence Detail 650 Not Applicable 
polypeptide OTTMUSP00000026473 VEGA | MGI Sequence Detail 146 Not Applicable 

For the selected sequences
All sequences(42) RefSeq(2) UniProt(3)
Polymorphisms SNPs within 2kb(25 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR020568 Ribosomal protein S5 domain 2-type fold
InterPro IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
InterPro IPR000754 Ribosomal protein S9
InterPro IPR020574 Ribosomal protein S9, conserved site
Protein Ontology PR:000014258 40S ribosomal protein S16
References (Earliest) J:31514 Meyuhas O, et al., Construction and identification of cDNA clones for mouse ribosomal proteins: application for the study of r-protein gene expression. Gene. 1980 Jul;10(2):113-29
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(42)
Other
accession IDs
MGD-MRK-14144, MGI:1353634, MGI:2144012

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/26/2014
MGI 5.19
The Jackson Laboratory