About   Help   FAQ
Rpn1 Gene Detail
Summary
  • Symbol
    Rpn1
  • Name
    ribophorin I
  • Synonyms
    D6Wsu137e, Rpn-1
  • Feature Type
    protein coding gene
  • IDs
    MGI:98084
    NCBI Gene: 103963
  • Alliance
    genome feature page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:88061464-88082286 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 39.13 cM
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    529 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_98084
 protein coding gene Chr6:88061455-88082286 (+)
129S1/SvImJ ENSMUSG00200041347
 protein coding gene Chr6:85004502-85025324 (+)
A/J ENSMUSG00195036276
 protein coding gene Chr6:84707847-84728669 (+)
AKR/J ENSMUSG00220026392
 protein coding gene Chr6:83609125-83629952 (+)
BALB/cJ ENSMUSG00180017443
 protein coding gene Chr6:85081766-85102563 (+)
C3H/HeJ ENSMUSG00175030163
 protein coding gene Chr6:92296368-92317190 (-)
C57BL/6NJ ENSMUSG00215031827
 protein coding gene Chr6:85091261-85112084 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028624
 protein coding gene Chr6:84182492-84201314 (+)
CAST/EiJ ENSTCUG00005017482
 protein coding gene Chr6:85011157-85031925 (+)
CBA/J ENSMUSG00210044057
 protein coding gene Chr6:84903124-84923970 (+)
DBA/2J ENSMUSG00185038926
 protein coding gene Chr6:85450451-85471274 (+)
FVB/NJ ENSMUSG00205034698
 protein coding gene Chr6:84076638-84097467 (+)
JF1/MsJ ENSUMUG00000040299
 protein coding gene Chr6:84375012-84395828 (+)
LP/J ENSMUSG00230050187
 protein coding gene Chr6:86585250-86606072 (+)
NOD/ShiLtJ ENSMUSG00190029560
 protein coding gene Chr6:84522284-84543113 (+)
NZO/HlLtJ ENSMUSG00225016583
 protein coding gene Chr6:88542751-88563522 (+)
PWK/PhJ ENSLUMG00010029309
 protein coding gene Chr6:83798734-83819560 (+)
SPRET/EiJ ENSMSPG00010037425
 protein coding gene Chr6:85939883-85958787 (+)
WSB/EiJ ENSIUOG00005028422
 protein coding gene Chr6:85429520-85450306 (+)



Homology
more
  • Human Ortholog
    RPN1, ribophorin I
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RPN1, ribophorin I
  • Synonyms
    OST1, RBPH1
  • Links
    NCBI Gene ID: 6184
    UniProt: P04843

  • Chr Location
    3q21.3; chr3:128619968-128681075 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    27
  • GO References
    12
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    721
  • Tissues
    107
  • cDNA Data
    372
  • Literature Summary
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000030062 Ensembl Gene Model | MGI Sequence Detail 20823 C57BL/6J ±  kb
transcript ENSMUST00000032143 Ensembl | MGI Sequence Detail 3633 Not Applicable  
polypeptide ENSMUSP00000032143 Ensembl | MGI Sequence Detail 608 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    6 Sequences
  • Protein Ontology
    PR:000014240 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1
    (term hierarchy)
  • InterPro Domains
    IPR007676 Ribophorin I
  • GlyGen
    Q91YQ5 4 sites, 7 N-linked glycans (2 sites), 1 O-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 375
    cDNA 372
    Primer pair 2
    Other 1
    Antibodies 1

    Microarray probesets 7
Other
Accession IDs
less
MGD-MRK-14107, MGD-MRK-14109, MGD-MRK-35774, MGI:107308, MGI:2141559
References
more
  • Summaries
    All 58
    Developmental Gene Expression 6
    Gene Ontology 12
    Phenotypes 14
  • Earliest
    J:4880 Barton DE, et al., The genes for ribophorins I and II are on human Chromosomes 3q and 20 and mouse Chromosomes 6 and 2, respectively. Cytogenet Cell Genet. 1987;46:577 (Abstr.)
  • Latest
    J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory