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Rnps1 Gene Detail
Summary
  • Symbol
    Rnps1
  • Name
    RNA binding protein with serine rich domain 1
  • Feature Type
    protein coding gene
  • IDs
    MGI:97960
    NCBI Gene: 19826
  • Gene Overview
    MyGene.info: RNPS1
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:24414646-24425898 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 12.39 cM, cytoband A3.3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    135 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_97960
protein coding gene Chr17:24414565-24425901 (+)
129S1/SvImJ MGP_129S1SvImJ_G0023297
protein coding gene Chr17:23395671-23406710 (+)
A/J MGP_AJ_G0023257
protein coding gene Chr17:22768329-22779294 (+)
AKR/J MGP_AKRJ_G0023224
protein coding gene Chr17:22842709-22853579 (+)
BALB/cJ MGP_BALBcJ_G0023262
protein coding gene Chr17:22949497-22961595 (+)
C3H/HeJ MGP_C3HHeJ_G0023022
protein coding gene Chr17:23192798-23203946 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023706
protein coding gene Chr17:24424464-24450331 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021182
protein coding gene Chr17:20234306-20244971 (+)
CAST/EiJ MGP_CASTEiJ_G0022524
protein coding gene Chr17:23030402-23041468 (+)
CBA/J MGP_CBAJ_G0022998
protein coding gene Chr17:25268894-25283131 (+)
DBA/2J MGP_DBA2J_G0023127
protein coding gene Chr17:22349591-22360982 (+)
FVB/NJ MGP_FVBNJ_G0023097
protein coding gene Chr17:22070418-22081330 (+)
LP/J MGP_LPJ_G0023204
protein coding gene Chr17:23703200-23714176 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023116
protein coding gene Chr17:24986115-24998114 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023743
protein coding gene Chr17:23120988-23132068 (+)
PWK/PhJ MGP_PWKPhJ_G0022273
protein coding gene Chr17:21105771-21117806 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022092
protein coding gene Chr17:21147512-21158522 (+)
WSB/EiJ MGP_WSBEiJ_G0022587
protein coding gene Chr17:23184979-23195946 (+)



Homology
more
  • Human Ortholog
    RNPS1, RNA binding protein with serine rich domain 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RNPS1, RNA binding protein with serine rich domain 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    E5.1
  • Links
    NCBI Gene ID: 10921
    neXtProt AC: NX_Q15287
    UniProt: Q15287

  • Chr Location
    16p13.3; chr16:2253116-2268412 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 40648
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: RNPS1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 19826 NCBI Gene Model | MGI Sequence Detail 11253 C57BL/6J ±  kb
transcript NM_001357626 RefSeq | MGI Sequence Detail 2310 C57BL/6  
polypeptide Q99M28 UniProt | EBI | MGI Sequence Detail 305 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 18
    cDNA 17
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGD-MRK-13950
References
more
  • Summaries
    All 34
    Developmental Gene Expression 3
    Gene Ontology 4
    Phenotypes 7
  • Earliest
    J:15705 Schmidt G, et al., Sequence of a complete murine cDNA reflecting an S phase-prevalent transcript encoding a protein with two types of nucleic acid binding motifs. Biochim Biophys Acta. 1993 Nov 16;1216(2):317-20
  • Latest
    J:269138 Blazquez L, et al., Exon Junction Complex Shapes the Transcriptome by Repressing Recursive Splicing. Mol Cell. 2018 Nov 1;72(3):496-509.e9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/04/2020
MGI 6.15
The Jackson Laboratory