Ptprcap MGI Mouse Gene Detail - MGI:97811 - protein tyrosine phosphatase, receptor type, C polypeptide-associated protein

Symbol

Ptprcap
Name

protein tyrosine phosphatase, receptor type, C polypeptide-associated protein
Synonyms

CD-45-AP, LSM-1

Feature Type

protein coding gene
IDs

MGI:97811
NCBI Gene: 19265
Gene Overview

MyGene.info: PTPRCAP
Alliance

gene page
Transcription Start Sites

3 TSS

Sequence Map

Chr19:4154646-4156710 bp, + strand
From NCBI annotation of GRCm38

View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 19, 3.86 cM, cytoband B
Mapping Data

12 experiments

SNPs within 2kb

27 from dbSNP Build 142
Strain Annotations

18
RFLP

1

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97811	protein coding gene	Chr19:4153604-4156751 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0024651	protein coding gene	Chr19:993595-995740 (+)
A/J	MGP_AJ_G0024617	protein coding gene	Chr19:956258-958403 (+)
AKR/J	MGP_AKRJ_G0024590	protein coding gene	Chr19:981426-983571 (+)
BALB/cJ	MGP_BALBcJ_G0024617	protein coding gene	Chr19:945809-947954 (+)
C3H/HeJ	MGP_C3HHeJ_G0024385	protein coding gene	Chr19:976500-978645 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0025065	protein coding gene	Chr19:1032449-1034594 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0022494	protein coding gene	Chr19:898691-900802 (+)
CAST/EiJ	MGP_CASTEiJ_G0023857	protein coding gene	Chr19:987349-989505 (+)
CBA/J	MGP_CBAJ_G0024356	protein coding gene	Chr19:1090098-1092243 (+)
DBA/2J	MGP_DBA2J_G0024484	protein coding gene	Chr19:916249-918394 (+)
FVB/NJ	MGP_FVBNJ_G0024451	protein coding gene	Chr19:926659-928804 (+)
LP/J	MGP_LPJ_G0024570	protein coding gene	Chr19:986520-988665 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0024481	protein coding gene	Chr19:1036245-1038390 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0025112	protein coding gene	Chr19:977892-980037 (+)
PWK/PhJ	MGP_PWKPhJ_G0023603	protein coding gene	Chr19:968407-970562 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0023408	protein coding gene	Chr19:958433-960585 (+)
WSB/EiJ	MGP_WSBEiJ_G0023919	protein coding gene	Chr19:966246-968368 (+)

Human Ortholog

PTPRCAP, protein tyrosine phosphatase receptor type C associated protein

Vertebrate Orthologs

6

Human Ortholog

PTPRCAP, protein tyrosine phosphatase receptor type C associated protein
Orthology source: HomoloGene, HGNC
Synonyms

CD45-AP, LPAP
Links

HGNC:9667

NCBI Gene ID: 5790

neXtProt AC: NX_Q14761

UniProt: Q14761
Chr Location

11q13.2; chr11:67435510-67437682 (-) GRCh38.p7

HomoloGene

Vertebrate Homology Class 48358
1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 macaque, rhesus
HCOP

human homology predictions: PTPRCAP
Protein SuperFamily

receptor tyrosine-protein phosphatase C-associated protein CD45-AP
Gene Tree

Ptprcap

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Phenotype Summary

7 phenotypes from 3 alleles in 2 genetic backgrounds
9 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	immune system	integument	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	neoplasm	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	vision/eye

Click cells to view annotations.

All Mutations and Alleles

10
Gene trapped

3
Targeted

7
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

8 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

Mice homozygous for a knock-out allele display impaired T and B cell responses to antigen receptor stimulation. Mice for a second knock-out allele show enlarged lymph nodes and increased lymph node cellularity but not significantly altered polyclonal T-cell responses.

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All GO Annotations

4
GO References

3

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell death	cell differentiation	cell population proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	nucleic acid-templated transcription	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

18
Tissues

11
cDNA Data

12
Literature Summary

2

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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Ptprcap interacts with 53 markers (Mir19a, Mir19b-1, Mir19b-2, ...) View All

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All Sequences

42
RefSeq

2
UniProt

3
CCDS

CCDS37884.1

Ensembl

ENSMUSG00000045826 (Evidence)
NCBI Gene

19265 (Evidence)

			Length	Strain/Species	Flank
genomic	19265	NCBI Gene Model \| MGI Sequence Detail	2065	C57BL/6J	± kb
transcript	NM_016933	RefSeq \| MGI Sequence Detail	853	C57BL/6
polypeptide	Q64697	UniProt \| EBI \| MGI Sequence Detail	197	Not Applicable

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UniProt

3 Sequences
Protein Ontology

PR:000013466 protein tyrosine phosphatase receptor type C-associated protein

(term hierarchy)
InterPro Domains

IPR016553 Protein tyrosine phosphatase receptor type C-associated protein

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All nucleic 14

Genomic 2

cDNA 12

Microarray probesets 3

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MGD-MRK-13680, MGI:2147585

Summaries

All 41

Developmental Gene Expression 2

Gene Ontology 3

Phenotypes 9
Earliest

J:16674 Takeda A, et al., Molecular cloning of the CD45-associated 30-kDa protein. J Biol Chem. 1994 Jan 28;269(4):2357-60
Latest

J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

TSS for Ptprcap:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154286	Chr19:4154620-4154629 (+)	-21 bp
Tssr154287	Chr19:4154640-4154668 (+)	8 bp
Tssr154288	Chr19:4156100-4156111 (+)	1,460 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer & Copyright Notice Send questions and comments to User Support.	last database update 02/18/2020 MGI 6.14