About   Help   FAQ
Prim2
Gene Detail
Symbol

Name
ID
Prim2
DNA primase, p58 subunit
MGI:97758
Feature Type
protein coding gene
Genetic Map
Chromosome 1
12.70 cM, cytoband B
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr1:33453810-33669795 bp, - strand
From VEGA annotation of GRCm38

  215986 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:731  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: DNA primase, large subunit
Gene Tree: Prim2

Human
homologs
Human Homolog PRIM2, primase, DNA, polypeptide 2 (58kDa)
NCBI Gene ID 5558
neXtProt AC  NX_P49643
Human Synonyms  p58, PRIM2A
Human Chr (Location)  6p12-p11.1; chr6:57314805-57646850 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(27) : Gene trapped(25) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Prim2 interacts with 105 markers (Mir1a-1, Mir1a-2, Mir18, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (344)    Tissues (110)    Images (59)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 344
cDNA source data(12)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(13) cDNA(12) Primer pair(1)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000049047 (Evidence)
Ensembl Gene ModelENSMUSG00000026134 (Evidence)
Entrez Gene19076 (Evidence)
DFCITC1575510
DoTSDT.101327199, DT.101358086, DT.492312
NIA Mouse Gene IndexU021208
EC2.7.7.-
Consensus CDS ProjectCCDS14862.1
International Mouse Knockout Project StatusPrim2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000049047 VEGA Gene Model | MGI Sequence Detail 215986 C57BL/6J ±  kb
transcript OTTMUST00000125283 VEGA | MGI Sequence Detail 1975 Not Applicable 
polypeptide OTTMUSP00000067969 VEGA | MGI Sequence Detail 505 Not Applicable 

For the selected sequences
All sequences(46) RefSeq(16) UniProt(5)
Polymorphisms
SNPs within 2kb(1392 from dbSNP Build 137)    SNPs within 2kb including multiple locations(1424)
Protein-related
information
ResourceIDDescription
InterPro IPR016558 DNA primase, large subunit, eukaryotic
InterPro IPR007238 DNA primase large subunit, eukaryotic/archaeal
Protein Ontology PR:000013216 DNA primase large subunit
References
(Earliest) J:22339 Prussak CE, et al., Mouse primase p49 subunit molecular cloning indicates conserved and divergent regions. J Biol Chem. 1989 Mar 25;264(9):4957-63
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(38)
Other
accession IDs
MGD-MRK-13609, MGI:2138206

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/18/2014
MGI 5.20
The Jackson Laboratory