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Opcml
Gene Detail
 Symbol
Name
ID
Opcml
opioid binding protein/cell adhesion molecule-like
MGI:97397
Synonyms 2900075O15Rik, B930023M13Rik, LOC235104, MGC:99974, Obcam
Feature Type protein coding gene
Genetic Map
Chromosome 9
13.73 cM
Detailed Genetic Map ± 1 cM


Mapping data(14)
Sequence Map
Chr9:27790775-28925410 bp, + strand
From VEGA annotation of GRCm38

  1134636 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:55663  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Opcml

Human
homologs
Human Homolog OPCML, opioid binding protein/cell adhesion molecule-like
NCBI Gene ID 4978
neXtProt AC  NX_Q14982
Human Synonyms  IGLON1, OBCAM, OPCM
Human Chr (Location)  11q25; chr11:132414981-133532508 (-)  GRCh38
Alleles
and
phenotypes
All alleles(6) : Targeted(2) Gene trapped(3) Spontaneous(1)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (155)    Tissues (19)    Images (23)
Theiler Stages: 23
Assay TypeResults
RNA in situ 155
cDNA source data(9)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(16) cDNA(15) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000024277 (Evidence)
Ensembl Gene ModelENSMUSG00000062257 (Evidence)
Entrez Gene330908 (Evidence)
DFCITC1590349, TC1599231, TC1647945, TC1663045
DoTSDT.55233085, DT.60103461, DT.94273676
NIA Mouse Gene IndexU010201, U010203
Consensus CDS ProjectCCDS22942.1
International Mouse Knockout Project StatusOpcml
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024277 VEGA Gene Model | MGI Sequence Detail 1134636 C57BL/6J ±  kb
transcript OTTMUST00000059453 VEGA | MGI Sequence Detail 2378 Not Applicable 
polypeptide OTTMUSP00000028915 VEGA | MGI Sequence Detail 345 Not Applicable 

For the selected sequences
All sequences(65) RefSeq(18) UniProt(5)
Polymorphisms RFLP(4) : SNPs within 2kb(7677 from dbSNP Build 137)    SNPs within 2kb including multiple locations(7685)
Protein-related
information
ResourceIDDescription
InterPro IPR013098 Immunoglobulin I-set
InterPro IPR007110 Immunoglobulin-like domain
InterPro IPR013783 Immunoglobulin-like fold
InterPro IPR003599 Immunoglobulin subtype
InterPro IPR003598 Immunoglobulin subtype 2
Protein Ontology PR:000011647 opioid-binding protein/cell adhesion molecule
References (Earliest) J:4131 Chakraborti A, et al., Genetic mapping of opioid binding protein gene(s) to mouse chromosome 9. Mamm Genome. 1993;4(3):179-82
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(41)
Other
accession IDs
MGD-MRK-12968, MGI:1920295, MGI:2143136, MGI:2443164, MGI:2685027

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory