Opcml
Gene Detail

Symbol Name ID

Opcml opioid binding protein/cell adhesion molecule-like MGI:97397

Synonyms

2900075O15Rik, B930023M13Rik, LOC235104, MGC:99974, Obcam

Feature Type

protein coding gene

Genetic Map

Chromosome 9

13.73 cM
Detailed Genetic Map ± 1 cM


Mapping data(14)

Sequence Map

Chr9:27790775-28925410 bp, + strand From VEGA annotation of GRCm38   1134636 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:55663  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Opcml

Human homologs

Human Homolog		OPCML, opioid binding protein/cell adhesion molecule-like
NCBI Gene ID		4978
neXtProt AC		NX_Q14982
Human Synonyms		IGLON1, OBCAM, OPCM
Human Chr (Location)		11q25; chr11:132284875-133402403 (-)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human OPCML

Alleles and phenotypes

All alleles(6) : Targeted(2) Gene trapped(3) Spontaneous(1)

Gene Ontology (GO) classifications

All GO classifications: (3 annotations)

Process	biological_process
Component	cellular_component
Function	molecular_function

External Resources: FuncBase

Expression

Literature Summary: (4 records)
Data Summary: Results (155)    Tissues (19)    Images (23)
Theiler Stages: 23

Assay Type	Results
RNA in situ	155

cDNA source data(9)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(16) cDNA(15) Other(1)
Microarray probesets(3)

Other database links

VEGA Gene Model	OTTMUSG00000024277 (Evidence)
Ensembl Gene Model	ENSMUSG00000062257 (Evidence)
Entrez Gene	330908 (Evidence)
DFCI	TC1590349, TC1599231, TC1647945, TC1663045
DoTS	DT.55233085, DT.60103461, DT.94273676
NIA Mouse Gene Index	U010201, U010203
Consensus CDS Project	CCDS22942.1
International Mouse Knockout Project Status	Opcml

Sequences

Length	Strain/Species
genomic	OTTMUSG00000024277	VEGA Gene Model | MGI Sequence Detail	1134636	C57BL/6J
transcript	OTTMUST00000059453	VEGA | MGI Sequence Detail	2378	Not Applicable
polypeptide	OTTMUSP00000028915	VEGA | MGI Sequence Detail	345	Not Applicable

All sequences(49) RefSeq(2) UniProt(5)

Polymorphisms

RFLP(4) : SNPs(5207 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR013098	Immunoglobulin I-set
InterPro	IPR007110	Immunoglobulin-like
InterPro	IPR013783	Immunoglobulin-like fold
InterPro	IPR003599	Immunoglobulin subtype
InterPro	IPR003598	Immunoglobulin subtype 2
Protein Ontology	PR:000011647	opioid-binding protein/cell adhesion molecule

References

(Earliest) J:4131 Chakraborti A, et al., Genetic mapping of opioid binding protein gene(s) to mouse chromosome 9. Mamm Genome. 1993;4(3):179-82
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(41)

Other accession IDs

MGD-MRK-12968, MGI:1920295, MGI:2143136, MGI:2443164, MGI:2685027