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Ly6c1
Gene Detail
Symbol

Name
ID
Member of
Ly6c1
lymphocyte antigen 6 complex, locus C1
MGI:96882
Ly6 cluster
Synonyms
Ly6c, Ly-6C
Feature Type
protein coding gene
Genetic Map
Chromosome 15
34.29 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr15:75044018-75048830 bp, - strand
From VEGA annotation of GRCm38

  4813 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:113718  Vertebrate Homology Class
7 mouse; 6 rat

Gene Tree: Ly6c1

Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Radiation induced(1)
Genomic Mutations involving Ly6c1 (1)
Interactions
Ly6c1 interacts with 58 markers (Mir17, Mir18b, Mir20b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Component anchored component of membrane, external side of plasma membrane, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (61)    Tissues (6)    Images (22)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 61
cDNA source data(111)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(115) Genomic(4) cDNA(111)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000045162 (Evidence)
Ensembl Gene ModelENSMUSG00000079018 (Evidence)
Entrez Gene17067 (Evidence)
UniGene1583
Consensus CDS ProjectCCDS27541.1
International Mouse Knockout Project StatusLy6c1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000045162 VEGA Gene Model | MGI Sequence Detail 4813 C57BL/6J ±  kb
transcript OTTMUST00000118677 VEGA | MGI Sequence Detail 784 Not Applicable 
polypeptide OTTMUSP00000066236 VEGA | MGI Sequence Detail 147 Not Applicable 

For the selected sequences
All sequences(52) RefSeq(12) UniProt(5)
Polymorphisms
RFLP(1) : SNPs within 2kb(104 from dbSNP Build 137)    SNPs within 2kb including multiple locations(204)
Protein-related
information
ResourceIDDescription
InterPro IPR001526 CD59 antigen
InterPro IPR018363 CD59 antigen, conserved site
InterPro IPR016054 Ly-6 antigen / uPA receptor -like
Protein Ontology PR:000029071 lymphocyte antigen 6C1
References
(Earliest) J:8979 Palfree RG, et al., N-terminal and cDNA characterization of murine lymphocyte antigen Ly-6C.2. J Immunol. 1988 Jan 1;140(1):305-10
(Latest) J:191745 Ramachandran P, et al., Differential Ly-6C expression identifies the recruited macrophage phenotype, which orchestrates the regression of murine liver fibrosis. Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):E3186-95
All references(34)
Other
accession IDs
MGD-MRK-12005, MGD-MRK-12048, MGI:2145928, MGI:2145929

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory