Stmn1-rs1 Pseudogene Detail

Summary

• Symbol
  Stmn1-rs1
• Name
  stathmin 1, related sequence 1
• Synonyms
  Lag-rs1, Lap18-rs1

• Feature Type
  pseudogene
• IDs
  MGI:96740
  NCBI Gene: 111186
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:115110588-115111049 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 67.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  16
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_96740	pseudogene	Chr9:115110160-115111138 (-)
129S1/SvImJ	ENSMUSG00200032219	pseudogene	Chr9:112207754-112208223 (-)
A/J	ENSMUSG00195044849	pseudogene	Chr9:111391496-111391965 (-)
AKR/J	ENSMUSG00220020166	pseudogene	Chr9:111855090-111855559 (-)
BALB/cJ	ENSMUSG00180030943	pseudogene	Chr9:111929158-111929627 (-)
C3H/HeJ	ENSMUSG00175019790	pseudogene	Chr9:112151113-112151582 (-)
C57BL/6NJ	ENSMUSG00215036321	pseudogene	Chr9:112056126-112056587 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017419	pseudogene	Chr9:111822044-111822513 (-)
CBA/J	ENSMUSG00210042500	pseudogene	Chr9:111898492-111898953 (-)
DBA/2J	ENSMUSG00185016881	pseudogene	Chr9:112235225-112235686 (-)
FVB/NJ	ENSMUSG00205033994	pseudogene	Chr9:112052355-112052824 (-)
JF1/MsJ	ENSUMUG00000051582	pseudogene	Chr9:112069793-112070254 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190015022	pseudogene	Chr9:111813273-111813734 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010038571	pseudogene	Chr9:111993512-111993973 (-)
SPRET/EiJ	ENSMSPG00010026588	pseudogene	Chr9:113659616-113660062 (-)
WSB/EiJ	ENSIUOG00005022703	pseudogene	Chr9:111273451-111273908 (-)

Homology

• Gene Tree
  Stmn1-rs1
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111564 (Evidence)
• NCBI Gene
  111186

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111564	Ensembl Gene Model | MGI Sequence Detail	462	C57BL/6J
transcript	ENSMUST00000214793	Ensembl | MGI Sequence Detail	462	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

Other
Accession IDs

MGD-MRK-11730

References

• Summaries
  All 7
• Earliest
  J:15564 Okazaki T, et al., Molecular diversity of the SCG10/stathmin gene family in the mouse [published erratum appears in Genomics 1994 May 1;21(1):298]. Genomics. 1993 Nov;18(2):360-73

TSS for Stmn1-rs1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91890	Chr9:115111134-115111143 (-)	-90 bp