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Kcnd1
Gene Detail
Symbol

Name
ID
Kcnd1
potassium voltage-gated channel, Shal-related family, member 1
MGI:96671
Synonyms
1110037K09Rik, Kca2-1, Kv4.1, mShal1, Shal
Feature Type
protein coding gene
Genetic Map
Chromosome X
3.53 cM
Detailed Genetic Map ± 1 cM


Mapping data(5)
Sequence Map
ChrX:7822289-7838280 bp, + strand
From VEGA annotation of GRCm38

  15992 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:21035  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: potassium voltage-gated channel, alpha subunit, subfamilies A/C/D/F/G/S
Gene Tree: Kcnd1

Human
homologs
Human Homolog KCND1, potassium voltage-gated channel, Shal-related subfamily, member 1
NCBI Gene ID 3750
neXtProt AC  NX_Q9NSA2
Human Synonyms  KV4.1
Human Chr (Location)  Xp11.23; chrX:48961378-48971844 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(2) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Kcnd1 interacts with 229 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (2 records)
Data Summary: Results (3)    Tissues (3)    Tissue x Stage Matrix (view)
Assay TypeResults
RT-PCR 3
cDNA source data(16)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(22) Genomic(5) cDNA(16) Primer pair(1)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000017926 (Evidence)
Ensembl Gene ModelENSMUSG00000009731 (Evidence)
Entrez Gene16506 (Evidence)
UniGene335968
DFCITC1598647
DoTSDT.91334382
NIA Mouse Gene IndexU019670
Consensus CDS ProjectCCDS29974.1
International Mouse Knockout Project StatusKcnd1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017926 VEGA Gene Model | MGI Sequence Detail 15992 C57BL/6J ±  kb
transcript OTTMUST00000043332 VEGA | MGI Sequence Detail 5287 Not Applicable 
polypeptide OTTMUSP00000019475 VEGA | MGI Sequence Detail 651 Not Applicable 

For the selected sequences
All sequences(27) RefSeq(2) UniProt(5)
Polymorphisms
RFLP(1) : SNPs within 2kb(48 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011333 BTB/POZ fold
InterPro IPR000210 BTB/POZ-like
InterPro IPR005821 Ion transport domain
InterPro IPR003131 Potassium channel tetramerisation-type BTB domain
InterPro IPR003968 Potassium channel, voltage dependent, Kv
InterPro IPR003975 Potassium channel, voltage dependent, Kv4
InterPro IPR004054 Potassium channel, voltage dependent, Kv4.1
InterPro IPR024587 Potassium channel, voltage dependent, Kv4, C-terminal
InterPro IPR021645 Shal-type voltage-gated potassium channels
InterPro IPR003091 Voltage-dependent potassium channel
InterPro IPR027359 Voltage-dependent potassium channel, four helix bundle domain
Protein Ontology PR:000000784 voltage-gated potassium channel KCND1
References
(Earliest) J:11182 Pak MD, et al., mShal, a subfamily of A-type K+ channel cloned from mammalian brain. Proc Natl Acad Sci U S A. 1991 May 15;88(10):4386-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(41)
Other
accession IDs
MGD-MRK-11557, MGD-MRK-11575, MGD-MRK-14398, MGI:1915999

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory