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Hoxc11
Gene Detail
 Symbol
Name
ID
Hoxc11
homeobox C11
MGI:96193
Synonyms Hox-3.7
Feature Type protein coding gene
Genetic Map
Chromosome 15
58.02 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr15:102954427-102957708 bp, + strand
From VEGA annotation of GRCm38

  3282 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:130362  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Hoxc11

Human
homologs
Human Homolog HOXC11, homeobox C11
NCBI Gene ID 3227
neXtProt AC  NX_O43248
Human Synonyms  HOX3H
Human Chr (Location)  12q13.3; chr12:53973126-53976419 (+)  GRCh38
Alleles
and
phenotypes
All alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (20 annotations)
Process anterior/posterior pattern specification, embryonic digit morphogenesis, ...
Component cytoplasm, nucleus
Function DNA binding, RNA polymerase II core promoter proximal region sequence-specific DNA binding, ...
External Resources: FuncBase
Expression
Literature Summary: (18 records)
Data Summary: Results (229)    Tissues (198)    Images (33)
Theiler Stages: 15, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 28
Assay TypeResults
RNA in situ 220
RT-PCR 9
cDNA source data(9)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(18) Genomic(5) cDNA(9) Primer pair(3) Other(1)
Microarray probesets(1)
Other database
links
VEGA Gene ModelOTTMUSG00000035144 (Evidence)
Ensembl Gene ModelENSMUSG00000001656 (Evidence)
Entrez Gene109663 (Evidence)
UniGene37692
DFCITC1643401
DoTSDT.40180807
Consensus CDS ProjectCCDS27892.1
International Mouse Knockout Project StatusHoxc11
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035144 VEGA Gene Model | MGI Sequence Detail 3282 C57BL/6J ±  kb
transcript OTTMUST00000089496 VEGA | MGI Sequence Detail 2021 Not Applicable 
polypeptide OTTMUSP00000048918 VEGA | MGI Sequence Detail 304 Not Applicable 

For the selected sequences
All sequences(15) RefSeq(2) UniProt(1)
Polymorphisms SNPs within 2kb(8 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR021918 Domain of unknown function DUF3528, homeobox protein, eukaryotic
InterPro IPR017970 Homeobox, conserved site
InterPro IPR001356 Homeodomain
InterPro IPR009057 Homeodomain-like
InterPro IPR020479 Homeodomain, metazoa
Protein Ontology PR:000008708 homeobox protein Hox-C11
References (Earliest) J:1775 Singh G, et al., Identification of 10 murine homeobox genes. Proc Natl Acad Sci U S A. 1991 Dec 1;88(23):10706-10
(Latest) J:203783 Li L, et al., Targeted disruption of Hotair leads to homeotic transformation and gene derepression. Cell Rep. 2013 Oct 17;5(1):3-12
All references(51)
Other
accession IDs
MGD-MRK-10845, MGD-MRK-10894

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory