About   Help   FAQ
Hmga1-rs1
Gene Detail
 Symbol
Name
ID
Hmga1-rs1
high mobility group AT-hook I, related sequence 1
MGI:96161
Synonyms ENSMUSG00000041059, Hmgi-rs1
Feature Type protein coding gene
Genetic Map
Chromosome 11
84.51 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr11:120762794-120764419 bp, + strand
From VEGA annotation of GRCm38

  1626 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:128226  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 2 zebrafish

Protein SuperFamily: nonhistone chromosomal protein HMG-I
Gene Tree: Hmga1-rs1

Human
homologs
Human Homolog HMGA1, high mobility group AT-hook 1
NCBI Gene ID 3159
neXtProt AC  NX_P17096
Human Synonyms  HMGA1A, HMGIY, HMG-R
Human Chr (Location)  6p21; chr6:34236800-34246231 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human HMGA1
Gene Ontology
(GO)
classifications
All GO classifications: (19 annotations)
Process base-excision repair, DNA catabolic process, endonucleolytic, ...
Component nucleus, senescence-associated heterochromatin focus
Function 5'-deoxyribose-5-phosphate lyase activity, DNA-(apurinic or apyrimidinic site) lyase activity, ...
Expression
Literature Summary: (2 records)
Data Summary: Results (360)    Tissues (65)    Images (26)
Theiler Stages: 23, 26, 28
Assay TypeResults
RNA in situ 360
cDNA source data(1)
External Resources: GEO   ArrayExpress
Molecular
reagents
All nucleic(2) cDNA(2)
Other database
links
VEGA Gene ModelOTTMUSG00000004118 (Evidence)
Ensembl Gene ModelENSMUSG00000078249 (Evidence)
Entrez Gene111241 (Evidence)
Consensus CDS ProjectCCDS49010.1
International Mouse Knockout Project StatusHmga1-rs1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000004118 VEGA Gene Model | MGI Sequence Detail 1626 C57BL/6J ±  kb
transcript OTTMUST00000009297 VEGA | MGI Sequence Detail 1626 Not Applicable 
polypeptide OTTMUSP00000004524 VEGA | MGI Sequence Detail 107 Not Applicable 

For the selected sequences
All sequences(19) RefSeq(5)
Polymorphisms RFLP(2) : SNPs within 2kb(15 from dbSNP Build 137)
References (Earliest) J:2290 Johnson KR, et al., Chromosomal localization of the murine gene and two related sequences encoding high-mobility-group I and Y proteins. Genomics. 1992 Mar;12(3):503-9
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(13)
Other
accession IDs
MGD-MRK-10797, MGI:3708561

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
04/08/2014
MGI 5.17
The Jackson Laboratory