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Hmga1-rs1
Gene Detail
Symbol

Name
ID
Hmga1-rs1
high mobility group AT-hook I, related sequence 1
MGI:96161
Synonyms
ENSMUSG00000041059, Hmgi-rs1
Feature Type
protein coding gene
Genetic Map
Chromosome 11
84.51 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr11:120762794-120764419 bp, + strand
From VEGA annotation of GRCm38

  1626 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:128226  Vertebrate Homology Class
1 human; 2 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 chicken

HCOP human homology predictions: HMGA1
Protein SuperFamily: nonhistone chromosomal protein HMG-I
Gene Tree: Hmga1-rs1

Human
homologs
HMGA1, high mobility group AT-hook 1
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 3159
neXtProt AC: NX_P17096

Human Synonyms: HMGA1A, HMGIY, HMG-R

Human Chr (Location): 6p21; chr6:34236800-34246231 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human HMGA1

Interactions
Hmga1-rs1 interacts with 132 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (2 records)
Data Summary: Results (360)    Tissues (65)    Images (26)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 360
cDNA source data(1)
Other mouse links: GEO   Expression Atlas
Molecular
reagents
All nucleic(2) cDNA(2)
Other database
links
VEGA Gene Model OTTMUSG00000004118 (Evidence)
Ensembl Gene Model ENSMUSG00000078249 (Evidence)
Entrez Gene 111241 (Evidence)
Consensus CDS Project CCDS49010.1
International Mouse Phenotyping Consortium Status Hmga1-rs1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000004118 VEGA Gene Model | MGI Sequence Detail 1626 C57BL/6J ±  kb
transcript OTTMUST00000009297 VEGA | MGI Sequence Detail 1626 Not Applicable 
polypeptide OTTMUSP00000004524 VEGA | MGI Sequence Detail 107 Not Applicable 

For the selected sequences
All sequences(19) RefSeq(5)
Polymorphisms
RFLP(2) : SNPs within 2kb(15 from dbSNP Build 137)
References
(Earliest) J:2290 Johnson KR, et al., Chromosomal localization of the murine gene and two related sequences encoding high-mobility-group I and Y proteins. Genomics. 1992 Mar;12(3):503-9
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(12)
Other
accession IDs
MGD-MRK-10797, MGI:3708561

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory