Vis1 Gene Detail

Summary

• Symbol
  Vis1
• Name
  viral integration site 1
• Synonyms
  Gm27276, His1, His-1

• Feature Type
  lncRNA gene
• IDs
  MGI:96091
  NCBI Gene: 110153
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:45129338-45169052 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  5 experiments

Strain
Comparison

• SNPs within 2kb
  170 from dbSNP Build 142
• Strain Annotations
  1
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_96091	lncRNA gene	Chr2:45128955-45172925 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Vis1
  

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  5

• Ensembl
  ENSMUSG00000120385 (Evidence)
• NCBI Gene
  110153

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120385	Ensembl Gene Model | MGI Sequence Detail	39715	C57BL/6J
transcript	ENSMUST00000244809	Ensembl | MGI Sequence Detail	275	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 1

  Other 1

Other
Accession IDs

MGD-MRK-10721, MGD-MRK-10723, MGI:5530658

References

• Summaries
  All 12
• Earliest
  J:1773 Askew DS, et al., His-1 and His-2: identification and chromosomal mapping of two commonly rearranged sites of viral integration in a myeloid leukemia. Oncogene. 1991 Nov;6(11):2041-7
• Latest
  J:39277 Li J, et al., Expression of the putative proto-oncogene His-1 in normal and neoplastic tissues. Am J Pathol. 1997 Apr;150(4):1297-305

TSS for Vis1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17643	Chr2:45129302-45129316 (+)	-29 bp
Tssr17644	Chr2:45136822-45136843 (+)	7,495 bp
Tssr17645	Chr2:45167042-45167102 (+)	37,734 bp