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H2-Oa Gene Detail
Summary
  • Symbol
    H2-Oa
  • Name
    histocompatibility 2, O region alpha locus
  • Synonyms
    H-2Oa
  • Feature Type
    protein coding gene
  • IDs
    MGI:95924
    NCBI Gene: 15001
  • Gene Overview
    MyGene.info: HLA-DOA
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:34092379-34095234 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 17.98 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_95924
protein coding gene Chr17:34092340-34095234 (+)
129S1/SvImJ MGP_129S1SvImJ_G0023556
protein coding gene Chr17:34066260-34069154 (+)
A/J MGP_AJ_G0023520
protein coding gene Chr17:32884351-32887232 (+)
AKR/J MGP_AKRJ_G0023483
protein coding gene Chr17:33300892-33303773 (+)
BALB/cJ MGP_BALBcJ_G0023522
protein coding gene Chr17:33057660-33060553 (+)
C3H/HeJ MGP_C3HHeJ_G0023283
protein coding gene Chr17:33654965-33657846 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023963
protein coding gene Chr17:35368377-35371271 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021441
protein coding gene Chr17:30424261-30427218 (+)
CAST/EiJ MGP_CASTEiJ_G0022782
protein coding gene Chr17:33754552-33757443 (+)
CBA/J MGP_CBAJ_G0023260
protein coding gene Chr17:36768455-36771336 (+)
DBA/2J MGP_DBA2J_G0023391
protein coding gene Chr17:32268340-32271220 (+)
FVB/NJ MGP_FVBNJ_G0023355
protein coding gene Chr17:32136264-32139400 (+)
LP/J MGP_LPJ_G0023466
protein coding gene Chr17:34345416-34348310 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023378
protein coding gene Chr17:35809627-35812520 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024005
protein coding gene Chr17:33649323-33652216 (+)
PWK/PhJ MGP_PWKPhJ_G0022532
protein coding gene Chr17:31195725-31198616 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022347
protein coding gene Chr17:31595244-31599240 (+)
WSB/EiJ MGP_WSBEiJ_G0022843
protein coding gene Chr17:33658120-33660998 (+)



Homology
more
  • Human Ortholog
    HLA-DOA, major histocompatibility complex, class II, DO alpha
  • Vertebrate Orthologs
    7
  • Human Ortholog
    HLA-DOA, major histocompatibility complex, class II, DO alpha
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HLA-DNA, HLADZ, HLA-DZA
  • Links
    NCBI Gene ID: 3111
    neXtProt AC: NX_P06340
    UniProt: P06340

  • Chr Location
    6p21.32; chr6:33004182-33009612 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    13 phenotypes from 3 alleles in 3 genetic backgrounds
    3 phenotypes from multigenic genotypes
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous inactivation of this gene results in abnormal antigen presentation via MHC class II. Mice homozygous for a knock-out allele show enhanced selection of CD4+ single positive thymocytes. Mice homozygous for a different knock-out allele show increased serum IgG1 levels.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 15001 NCBI Gene Model | MGI Sequence Detail 2856 C57BL/6J ±  kb
    transcript NM_008206 RefSeq | MGI Sequence Detail 1064 C57BL/6  
    polypeptide NP_032232 RefSeq | MGI Sequence Detail 250 C57BL/6  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      3 Sequences
    • InterPro Domains
      IPR003597 Immunoglobulin C1-set
      IPR007110 Immunoglobulin-like domain
      IPR036179 Immunoglobulin-like domain superfamily
      IPR013783 Immunoglobulin-like fold
      IPR003006 Immunoglobulin/major histocompatibility complex, conserved site
      IPR011162 MHC classes I/II-like antigen recognition protein
      IPR014745 MHC class II, alpha/beta chain, N-terminal
      IPR001003 MHC class II, alpha chain, N-terminal
    Molecular
    Reagents
    less
    • All nucleic 30
      Genomic 8
      cDNA 21
      Primer pair 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGD-MRK-10408, MGD-MRK-10520
    References
    more
    • Summaries
      All 35
      Developmental Gene Expression 1
      Gene Ontology 3
      Phenotypes 13
    • Earliest
      J:1569 Karlsson L, et al., The alpha chain gene of H-2O has an unexpected location in the major histocompatibility complex. J Exp Med. 1992 Aug 1;176(2):477-83
    • Latest
      J:190823 Gu Y, et al., Immunodeficiency and autoimmunity in h2-o-deficient mice. J Immunol. 2013 Jan 1;190(1):126-37

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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    Funding Information
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    last database update
    06/11/2019
    MGI 6.14
    The Jackson Laboratory