About   Help   FAQ
Slc39a7
Gene Detail
Symbol

Name
ID
Slc39a7
solute carrier family 39 (zinc transporter), member 7
MGI:95909
Synonyms
H-2Ke4, H2-Ke4, Ke-4, KE4, Ring5, Zip7
Feature Type
protein coding gene
Genetic Map
Chromosome 17
17.98 cM
Detailed Genetic Map ± 1 cM


Mapping data(5)
Sequence Map
Chr17:34028269-34031682 bp, - strand
From VEGA annotation of GRCm38

  3414 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:5072  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLC39A7
Gene Tree: Slc39a7

Human
homologs
SLC39A7, solute carrier family 39 (zinc transporter), member 7
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 7922
neXtProt AC: NX_Q92504

Human Synonyms: D6S115E, D6S2244E, H2-KE4, HKE4, KE4, RING5, ZIP7

Human Chr (Location): 6p21.3; chr6:33200826-33204437 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc39a7 interacts with 52 markers (Mir34a, Mir34b, Mir34c, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process ion transport, metal ion transport, ...
Component endoplasmic reticulum, Golgi apparatus, ...
Function metal ion transmembrane transporter activity, protein binding
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (16)    Tissues (11)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 1
Northern blot 6
RT-PCR 9
cDNA source data(183)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase slc39a7 ; ZFIN slc39a7    NEW 
Molecular
reagents
All nucleic(198) Genomic(10) cDNA(186) Primer pair(2)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000035430 (Evidence)
Ensembl Gene Model ENSMUSG00000024327 (Evidence)
Entrez Gene 14977 (Evidence)
UniGene 18556
DFCI TC1572519, TC1601731, TC1666150
Consensus CDS Project CCDS37576.1
International Mouse Phenotyping Consortium Status Slc39a7
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035430 VEGA Gene Model | MGI Sequence Detail 3414 C57BL/6J ±  kb
transcript OTTMUST00000090595 VEGA | MGI Sequence Detail 2244 Not Applicable 
polypeptide OTTMUSP00000049736 VEGA | MGI Sequence Detail 476 Not Applicable 

For the selected sequences
All sequences(55) RefSeq(4) UniProt(4)
Polymorphisms
SNPs within 2kb(61 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003689 Zinc/iron permease
Protein Ontology PR:000015134 zinc transporter SLC39A7
References
(Earliest) J:9525 Abe K, et al., Searching for coding sequences in the mammalian genome: the H-2K region of the mouse MHC is replete with genes expressed in embryos. EMBO J. 1988 Nov;7(11):3441-9
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(44)
Other
accession IDs
MGD-MRK-10394, MGD-MRK-10505, MGI:2146748, MGI:2146797, MGI:2146956

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
06/23/2015
MGI 5.22
The Jackson Laboratory