About   Help   FAQ
Ggta1
Gene Detail
 Symbol
Name
ID
Ggta1
glycoprotein galactosyltransferase alpha 1, 3
MGI:95704
Synonyms alpha3GalT, alpha Gal, Gal, GALT, Ggta, Ggta-1, glycoprotein alpha galactosyl transferase 1
Feature Type protein coding gene
Genetic Map
Chromosome 2
23.60 cM
Detailed Genetic Map ± 1 cM


Mapping data(8)
Sequence Map
Chr2:35400179-35463231 bp, - strand
From VEGA annotation of GRCm38

  63053 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:7730  Vertebrate Homology Class
1 mouse; 1 rat; 1 dog

Protein SuperFamily: histo-blood group 1 transferase
Gene Tree: Ggta1

Mutations,
alleles, and
phenotypes
All mutations/alleles(136) : Gene trapped(135) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for disruption of this gene display a normal phenotype.
 
Interactions
Ggta1 interacts with 242 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process carbohydrate metabolic process, protein galactosylation at cell surface
Component Golgi apparatus, Golgi cisterna, ...
Function metal ion binding, N-acetyllactosaminide 3-alpha-galactosyltransferase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (94)    Tissues (94)   
Theiler Stages: 22
Assay TypeResults
RNA in situ 94
cDNA source data(78)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(87) Genomic(7) cDNA(79) Other(1)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000012125 (Evidence)
Ensembl Gene ModelENSMUSG00000035778 (Evidence)
Entrez Gene14594 (Evidence)
UniGene281124
DFCITC1575906, TC1590305, TC1593530, TC1593606
DoTSDT.533605, DT.94345267, DT.94345268
NIA Mouse Gene IndexU022545
EC2.4.1.87
Consensus CDS ProjectCCDS15964.2, CCDS50576.1
International Mouse Knockout Project StatusGgta1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000012125 VEGA Gene Model | MGI Sequence Detail 63053 C57BL/6J ±  kb
transcript OTTMUST00000028945 VEGA | MGI Sequence Detail 3606 Not Applicable 
polypeptide OTTMUSP00000013083 VEGA | MGI Sequence Detail 406 Not Applicable 

For the selected sequences
All sequences(79) RefSeq(24) UniProt(6)
Polymorphisms RFLP(3) : SNPs within 2kb(108 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR005076 Glycosyl transferase, family 6
Protein Ontology PR:000008372 N-acetyllactosaminide alpha-1,3-galactosyltransferase
References (Earliest) J:14645 Sheares BT, et al., Modulation of two distinct galactosyltransferase activities in populations of mouse peritoneal macrophages. J Immunol. 1987 Dec 1;139(11):3748-52
(Latest) J:203264 Tazawa H, et al., Blockade of invariant TCR-CD1d interaction specifically inhibits antibody production against blood group A carbohydrates. Blood. 2013 Oct 10;122(15):2582-90
All references(82)
Other
accession IDs
MGD-MRK-10064, MGD-MRK-10065, MGD-MRK-10066, MGI:2139304

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
09/09/2014
MGI 5.19
The Jackson Laboratory