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Ggta1
Gene Detail
Symbol

Name
ID
Ggta1
glycoprotein galactosyltransferase alpha 1, 3
MGI:95704
Synonyms
alpha3GalT, alpha Gal, Gal, GALT, Ggta, Ggta-1, glycoprotein alpha galactosyl transferase 1
Feature Type
protein coding gene
Genetic Map
Chromosome 2
23.60 cM
Detailed Genetic Map ± 1 cM


Mapping data(8)
Sequence Map
Chr2:35400179-35463231 bp, - strand
From VEGA annotation of GRCm38

  63053 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:7730  Vertebrate Homology Class
1 mouse; 1 rat; 1 cattle; 1 dog

HCOP human homology predictions: GGTA1P
Protein SuperFamily: histo-blood group 1 transferase
Gene Tree: Ggta1

Human
homologs
GGTA1P, glycoprotein, alpha-galactosyltransferase 1 pseudogene
Orthology source: HGNC

IDs:
NCBI Gene ID: 2681
neXtProt AC: NX_Q4G0N0

Human Synonyms: a1/3GTP, GGTA, GGTA1, GLYT2

Human Chr (Location): 9q33.2; chr9:121455041-121500027 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(136) : Gene trapped(135) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for disruption of this gene display a normal phenotype.
 
Interactions
Ggta1 interacts with 241 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (2 records)
Data Summary: Results (94)    Tissues (94)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 94
cDNA source data(78)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(87) Genomic(7) cDNA(79) Other(1)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000012125 (Evidence)
Ensembl Gene Model ENSMUSG00000035778 (Evidence)
Entrez Gene 14594 (Evidence)
UniGene 281124
DFCI TC1575906, TC1590305, TC1593530, TC1593606
DoTS DT.533605, DT.94345267, DT.94345268
NIA Mouse Gene Index U022545
EC 2.4.1.87
Consensus CDS Project CCDS15964.2, CCDS50576.1
International Mouse Phenotyping Consortium Status Ggta1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000012125 VEGA Gene Model | MGI Sequence Detail 63053 C57BL/6J ±  kb
transcript OTTMUST00000028945 VEGA | MGI Sequence Detail 3606 Not Applicable 
polypeptide OTTMUSP00000013083 VEGA | MGI Sequence Detail 406 Not Applicable 

For the selected sequences
All sequences(75) RefSeq(20) UniProt(6)
Polymorphisms
RFLP(3) : SNPs within 2kb(108 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR005076 Glycosyl transferase, family 6
Protein Ontology PR:000008372 N-acetyllactosaminide alpha-1,3-galactosyltransferase
References
(Earliest) J:14645 Sheares BT, et al., Modulation of two distinct galactosyltransferase activities in populations of mouse peritoneal macrophages. J Immunol. 1987 Dec 1;139(11):3748-52
(Latest) J:221155 Quintens R, et al., Identification of novel radiation-induced p53-dependent transcripts extensively regulated during mouse brain development. Biol Open. 2015;4(3):331-44
All references(82)
Other
accession IDs
MGD-MRK-10064, MGD-MRK-10065, MGD-MRK-10066, MGI:2139304

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory