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Csde1 Gene Detail
Summary
  • Symbol
    Csde1
  • Name
    cold shock domain containing E1, RNA binding
  • Synonyms
    D3Jfr1, mKIAA0885, unr
  • Feature Type
    protein coding gene
  • IDs
    MGI:92356
    NCBI Gene: 229663
  • Gene Overview
    MyGene.info: CSDE1
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:103020431-103058186 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 45.25 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    109 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_92356
protein coding gene Chr3:103020426-103058186 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027688
protein coding gene Chr3:104261882-104301207 (+)
A/J MGP_AJ_G0027647
protein coding gene Chr3:100949823-100987394 (+)
AKR/J MGP_AKRJ_G0027613
protein coding gene Chr3:103436354-103475273 (+)
BALB/cJ MGP_BALBcJ_G0027660
protein coding gene Chr3:100722015-100759539 (+)
C3H/HeJ MGP_C3HHeJ_G0027389
protein coding gene Chr3:103751036-103792016 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028103
protein coding gene Chr3:108127613-108168518 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025444
protein coding gene Chr3:97093032-97129922 (+)
CAST/EiJ MGP_CASTEiJ_G0026846
protein coding gene Chr3:102874828-102909857 (+)
CBA/J MGP_CBAJ_G0027364
protein coding gene Chr3:111818078-111860993 (+)
DBA/2J MGP_DBA2J_G0027507
protein coding gene Chr3:100201460-100239318 (+)
FVB/NJ MGP_FVBNJ_G0027475
protein coding gene Chr3:98131421-98169910 (+)
LP/J MGP_LPJ_G0027614
protein coding gene Chr3:105594212-105631435 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027504
protein coding gene Chr3:117984503-118025283 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028158
protein coding gene Chr3:102938863-102981585 (+)
PWK/PhJ MGP_PWKPhJ_G0026572
protein coding gene Chr3:99940908-99980671 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026394
protein coding gene Chr3:101035261-101073545 (+)
WSB/EiJ MGP_WSBEiJ_G0026925
protein coding gene Chr3:103507525-103552063 (+)



Homology
more
  • Human Ortholog
    CSDE1, cold shock domain containing E1
  • Vertebrate Orthologs
    12
  • Human Ortholog
    CSDE1, cold shock domain containing E1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    D1S155E, UNR
  • Links
    NCBI Gene ID: 7812
    neXtProt AC: NX_O75534
    UniProt: O75534

  • Chr Location
    1p13.2; chr1:114716913-114758050 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 5179
    1 human;1 mouse;2 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;2 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CSDE1
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    15 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 229663 NCBI Gene Model | MGI Sequence Detail 37756 C57BL/6J ±  kb
transcript NM_144901 RefSeq | MGI Sequence Detail 4220 C57BL/6  
polypeptide Q91W50 UniProt | EBI | MGI Sequence Detail 798 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 37
    cDNA 36
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-6231, MGI:2139611, MGI:2385887
References
more
  • Summaries
    All 47
    Developmental Gene Expression 7
    Diseases 1
    Gene Ontology 4
    Phenotypes 15
  • Earliest
    J:10710 Jeffers M, et al., Characterization of unr; a gene closely linked to N-ras. Nucleic Acids Res. 1990 Aug 25;18(16):4891-9
  • Latest
    J:256883 Zhou J, et al., Conserved expression of ultra-conserved noncoding RNA in mammalian nervous system. Biochim Biophys Acta. 2017 Dec;1860(12):1159-1168

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory