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Csde1 Gene Detail
Summary
  • Symbol
    Csde1
  • Name
    cold shock domain containing E1, RNA binding
  • Synonyms
    D3Jfr1, mKIAA0885, unr
  • Feature Type
    protein coding gene
  • IDs
    MGI:92356
    NCBI Gene: 229663
  • Gene Overview
    MyGene.info: CSDE1
Location & Maps
more
  • Sequence Map
    Chr3:103020426-103058186 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      37761 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 45.25 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    CSDE1, cold shock domain containing E1
  • Vertebrate Orthologs
    12
  • Human Ortholog
    CSDE1, cold shock domain containing E1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    D1S155E, UNR
  • Links
    NCBI Gene ID: 7812
    neXtProt AC: NX_O75534

  • Chr Location
    1p13.2; chr1:114716913-114758050 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 5179
    1 human;1 mouse;2 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;2 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CSDE1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
  • All Mutations and Alleles
    99
  • Chemically induced (other)
    1
  • Gene trapped
    94
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    2 involving Csde1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000054929 VEGA Gene Model | MGI Sequence Detail 37761 C57BL/6J ±  kb
transcript OTTMUST00000136117 VEGA | MGI Sequence Detail 4318 Not Applicable  
polypeptide OTTMUSP00000071921 VEGA | MGI Sequence Detail 798 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    109 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 34
    cDNA 34

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-6231, MGI:2139611, MGI:2385887
References
more
  • Summaries
    All 39
    Developmental Gene Expression 4
    Gene Ontology 4
    Phenotypes 13
  • Earliest
    J:10710 Jeffers M, et al., Characterization of unr; a gene closely linked to N-ras. Nucleic Acids Res. 1990 Aug 25;18(16):4891-9
  • Latest
    J:207432 Kobayashi H, et al., The control of precerebellar neuron migration by RNA-binding protein Csde1. Neuroscience. 2013 Dec 3;253:292-303

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory