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D17H6S53E Gene Detail
Summary
  • Symbol
    D17H6S53E
  • Name
    DNA segment, Chr 17, human D6S53E
  • Synonyms
    NG34
  • Feature Type
    protein coding gene
  • IDs
    MGI:90673
    NCBI Gene: 114585
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:35345378-35347831 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 18.59 cM
Strain
Comparison
more
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_90673
 protein coding gene Chr17:35345349-35347831 (+)
129S1/SvImJ MGP_129S1SvImJ_G0023621
 protein coding gene Chr17:35267785-35272040 (+)
A/J MGP_AJ_G0023581
 protein coding gene Chr17:34099663-34101949 (+)
AKR/J MGP_AKRJ_G0023549
 protein coding gene Chr17:34576213-34578643 (+)
BALB/cJ MGP_BALBcJ_G0023587
 protein coding gene Chr17:34238642-34241124 (+)
C3H/HeJ MGP_C3HHeJ_G0023348
 protein coding gene Chr17:34977689-34979985 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024026
 protein coding gene Chr17:36610052-36614193 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021507
 protein coding gene Chr17:31869007-31871477 (+)
CAST/EiJ MGP_CASTEiJ_G0022844
 protein coding gene Chr17:34972940-34975381 (+)
CBA/J MGP_CBAJ_G0023326
 protein coding gene Chr17:38118035-38119855 (+)
DBA/2J MGP_DBA2J_G0023454
 protein coding gene Chr17:33423744-33426011 (+)
FVB/NJ MGP_FVBNJ_G0023421
 protein coding gene Chr17:33262439-33265238 (+)
LP/J MGP_LPJ_G0023531
 protein coding gene Chr17:35596986-35600844 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023443
 protein coding gene Chr17:37049455-37052601 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024071
 protein coding gene Chr17:34796384-34798877 (+)
PWK/PhJ MGP_PWKPhJ_G0022592
 protein coding gene Chr17:32257395-32259851 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022412
 protein coding gene Chr17:32809951-32812235 (+)
WSB/EiJ MGP_WSBEiJ_G0022908
 protein coding gene Chr17:34917486-34920505 (+)



Homology
more
  • Human Ortholog
    C6orf47, chromosome 6 open reading frame 47
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C6orf47, chromosome 6 open reading frame 47
  • Synonyms
    D6S53E, G4, NG34
  • Links
    NCBI Gene ID: 57827
    neXtProt AC: NX_O95873
    UniProt: O95873

  • Chr Location
    6p21.33; chr6:31658298-31660778 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 114585 NCBI Gene Model | MGI Sequence Detail 2454 C57BL/6J ±  kb
transcript NM_033477 RefSeq | MGI Sequence Detail 2126 ZRU/MplStud  
polypeptide Q9Z1R4 UniProt | EBI | MGI Sequence Detail 293 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 1
Other
Accession IDs
less
MGD-MRK-4480
References
more
  • Summaries
    All 18
    Phenotypes 3
  • Earliest
    J:14354 Lund T, et al., RFLP analysis of the MHC class III region defines unique haplotypes for the non-obese diabetic, cataract Shionogi and the non-obese non-diabetic mouse strains. Diabetologia. 1993 Aug;36(8):727-33
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory