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Galnt4 Gene Detail
Summary
  • Symbol
    Galnt4
  • Name
    UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4
  • Synonyms
    ppGaNTase-T4
  • Feature Type
    protein coding gene
  • IDs
    MGI:894692
    NCBI Gene: 14426
Location & Maps
more
  • Sequence Map
    Chr10:99108159-99113247 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      5089 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 51.06 cM, cytoband C3
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    GALNT4, polypeptide N-acetylgalactosaminyltransferase 4
  • Vertebrate Orthologs
    8
  • Human Ortholog
    GALNT4, polypeptide N-acetylgalactosaminyltransferase 4
    Orthology source: HomoloGene
  • Synonyms
    GALNACT4, GALNAC-T4
  • Links
    NCBI Gene ID: 8693
    neXtProt AC: NX_Q8N4A0

  • Chr Location
    12q21.33; chr12:89519412-89524806 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 phenotype from multigenic genotypes
    6 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Targeted
    1
  • Genomic Mutations
    1 involving Galnt4
  • Incidental Mutations
    APF
An unpublished knockout mutation is reported to have no overt phenotypic consequences.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000032482 VEGA Gene Model | MGI Sequence Detail 5089 C57BL/6J ±  kb
transcript OTTMUST00000080800 VEGA | MGI Sequence Detail 5089 Not Applicable  
polypeptide OTTMUSP00000043070 VEGA | MGI Sequence Detail 578 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    3 from dbSNP Build 142
Protein
Information
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  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000007826 polypeptide N-acetylgalactosaminyltransferase 4
  • EC
  • InterPro Domains
    IPR001173 Glycosyltransferase 2-like
    IPR029044 Nucleotide-diphospho-sugar transferases
    IPR000772 Ricin B, lectin domain
Molecular
Reagents
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  • All nucleic 44
    cDNA 43
    Primer pair 1

    Microarray probesets 6
Other
Accession IDs
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MGI:2143775
References
more
  • Summaries
    All 27
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 6
  • Earliest
    J:40489 Hagen FK, et al., cDNA cloning and expression of a novel UDP-N-acetyl-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase. J Biol Chem. 1997 May 23;272(21):13843-8
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory