Col9a3
Gene Detail

Symbol Name ID

Col9a3 collagen, type IX, alpha 3 MGI:894686

Feature Type

protein coding gene

Genetic Map

Chromosome 2

103.14 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)

Sequence Map

Chr2:180597790-180622189 bp, + strand From VEGA annotation of GRCm38   24400 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:20438  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Col9a3

Human homologs

Human Homolog		COL9A3, collagen, type IX, alpha 3
NCBI Gene ID		1299
neXtProt AC		NX_Q14050
Human Synonyms		DJ885L7.4.1, EDM3, IDD, MED
Human Chr (Location)		20q13.3; chr20:61448414-61472511 (+)  GRCh37.p10
Disease Associations		(2) Diseases Associated with Human COL9A3

Alleles and phenotypes

All alleles(1) : Targeted(1)

Gene Ontology (GO) classifications

All GO classifications: (2 annotations)

Component

collagen, collagen type IX

External Resources: FuncBase

Expression

Literature Summary: (19 records)
Data Summary: Results (308)    Tissues (69)    Images (39)
Theiler Stages: 18, 19, 20, 21, 22, 23, 28

Assay Type	Results
RNA in situ	264
RT-PCR	44

cDNA source data(65)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(69) cDNA(67) Primer pair(1) Other(1)
Microarray probesets(4)

Other database links

VEGA Gene Model	OTTMUSG00000016344 (Evidence)
Ensembl Gene Model	ENSMUSG00000027570 (Evidence)
Entrez Gene	12841 (Evidence)
UniGene	141312
DFCI	TC1576771
NIA Mouse Gene Index	U056872
Consensus CDS Project	CCDS17180.1
International Mouse Knockout Project Status	Col9a3

Sequences

Length	Strain/Species
genomic	OTTMUSG00000016344	VEGA Gene Model | MGI Sequence Detail	24400	C57BL/6J
transcript	OTTMUST00000039291	VEGA | MGI Sequence Detail	3046	Not Applicable
polypeptide	OTTMUSP00000017558	VEGA | MGI Sequence Detail	680	Not Applicable

All sequences(41) RefSeq(2) UniProt(8)

Polymorphisms

SNPs(92 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR008160	Collagen triple helix repeat
Protein Ontology	PR:000005724	collagen alpha-3(IX) chain

References

(Earliest) J:17466 Abe N, et al., The complete primary structure of the long form of mouse alpha 1(IX) collagen chain and its expression during limb development. Biochim Biophys Acta. 1994 Jan 11;1204(1):61-7
(Latest) J:183829 Correa SM, et al., Sex reversal in C57BL/6J XY mice caused by increased expression of ovarian genes and insufficient activation of the testis determining pathway. PLoS Genet. 2012 Apr;8(4):e1002569
All references(46)

Other accession IDs

MGI:2139235