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Col9a3 Gene Detail
Summary
  • Symbol
    Col9a3
  • Name
    collagen, type IX, alpha 3
  • Feature Type
    protein coding gene
  • IDs
    MGI:894686
    NCBI Gene: 12841
  • Gene Overview
    MyGene.info: COL9A3
Location & Maps
more
  • Sequence Map
    Chr2:180597790-180622189 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      24400 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 103.14 cM
  • Mapping Data
    4 experiments
Homology
more
  • Human Ortholog
    COL9A3, collagen type IX alpha 3 chain
  • Vertebrate Orthologs
    9
  • Human Ortholog
    COL9A3, collagen type IX alpha 3 chain
    Orthology source: HomoloGene, HGNC
  • Synonyms
    DJ885L7.4.1, EDM3, IDD, MED
  • Links
    NCBI Gene ID: 1299
    neXtProt AC: NX_Q14050

  • Chr Location
    20q13.33; chr20:62817062-62841159 (+)  GRCh38.p2

Human Diseases
more
  • Diseases
    2 with human COL9A3 associations

Human Disease Mouse Models
       Epiphyseal Dysplasia, Multiple, 3; EDM3   OMIM: 600969
Intervertebral Disc Disease; IDD   OMIM: 603932
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016344 VEGA Gene Model | MGI Sequence Detail 24400 C57BL/6J ±  kb
transcript OTTMUST00000039291 VEGA | MGI Sequence Detail 3046 Not Applicable  
polypeptide OTTMUSP00000017558 VEGA | MGI Sequence Detail 680 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    97 from dbSNP Build 142
Protein
Information
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  • UniProt
    8 Sequences
  • InterPro Domains
    IPR008160 Collagen triple helix repeat
Molecular
Reagents
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  • All nucleic 72
    cDNA 69
    Primer pair 2
    Other 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:2139235
References
more
  • Summaries
    All 46
    Developmental Gene Expression 22
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:17466 Abe N, et al., The complete primary structure of the long form of mouse alpha 1(IX) collagen chain and its expression during limb development. Biochim Biophys Acta. 1994 Jan 11;1204(1):61-7
  • Latest
    J:205051 Miller JA, et al., Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates. Development. 2013 Nov;140(22):4633-44

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/22/2016
MGI 6.06
The Jackson Laboratory