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Tmem165
Gene Detail
Symbol

Name
ID
Tmem165
transmembrane protein 165
MGI:894407
Synonyms
pFT27, Tpardl, Tparl
Feature Type
protein coding gene
Genetic Map
Chromosome 5
40.56 cM
Detailed Genetic Map ± 1 cM


Mapping data(6)
Sequence Map
Chr5:76183880-76209245 bp, + strand
From VEGA annotation of GRCm38

  25366 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:5411  Vertebrate Homology Class
1 human; 1 mouse; 2 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: TMEM165
Gene Tree: Tmem165

Human
homologs
TMEM165, transmembrane protein 165
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 55858
neXtProt AC: NX_Q9HC07

Human Synonyms: CDG2K, FT27, GDT1, TMPT27, TPARL

Human Chr (Location): 4q12; chr4:55395913-55452974 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human TMEM165

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(2) Targeted(2)
Incidental mutations (data from APF )
Interactions
Tmem165 interacts with 143 markers (Mir24-1, Mir24-2, Mir101a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process cellular calcium ion homeostasis, Golgi calcium ion transport, ...
Component endosome, endosome membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(122)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase tmem165    NEW 
Molecular
reagents
All nucleic(126) Genomic(4) cDNA(122)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000026458 (Evidence)
Ensembl Gene Model ENSMUSG00000029234 (Evidence)
Entrez Gene 21982 (Evidence)
UniGene 790
DoTS DT.495419, DT.55128413, DT.99851257
NIA Mouse Gene Index U005699
Consensus CDS Project CCDS19359.1
International Mouse Phenotyping Consortium Status Tmem165
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000026458 VEGA Gene Model | MGI Sequence Detail 25366 C57BL/6J ±  kb
transcript OTTMUST00000065429 VEGA | MGI Sequence Detail 1897 Not Applicable 
polypeptide OTTMUSP00000032613 VEGA | MGI Sequence Detail 323 Not Applicable 

For the selected sequences
All sequences(43) RefSeq(2) UniProt(3)
Polymorphisms
SNPs within 2kb(187 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001727 Uncharacterised protein family UPF0016
Protein Ontology PR:000031748 transmembrane protein 165
References
(Earliest) J:39942 Akagi J, et al., Messenger RNA expressed in mouse teratocarcinoma stem cells and down-regulated by a tumor-promoting phorbol ester codes for a novel transmembrane protein. Biochem Biophys Res Commun. 1988 Dec 15;157(2):548-57
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)
Other
accession IDs
MGI:2141106

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory