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Clta Gene Detail
Summary
  • Symbol
    Clta
  • Name
    clathrin, light polypeptide (Lca)
  • Feature Type
    protein coding gene
  • IDs
    MGI:894297
    NCBI Gene: 12757
Location & Maps
more
  • Sequence Map
    Chr4:44004452-44032846 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      28395 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 23.09 cM, cytoband B1
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    CLTA, clathrin light chain A
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CLTA, clathrin light chain A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    LCA
  • Links
    NCBI Gene ID: 1211
    neXtProt AC: NX_P09496

  • Chr Location
    9p13.3; chr9:36190856-36212062 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    15
  • Chemically and radiation induced
    1
  • Gene trapped
    12
  • Targeted
    2
  • Genomic Mutations
    1 involving Clta
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000007204 VEGA Gene Model | MGI Sequence Detail 28395 C57BL/6J ±  kb
transcript OTTMUST00000016629 VEGA | MGI Sequence Detail 1135 Not Applicable  
polypeptide OTTMUSP00000007656 VEGA | MGI Sequence Detail 248 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    283 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 283
    cDNA 283

    Microarray probesets 5
Other
Accession IDs
less
MGI:2140516
References
more
  • Summaries
    All 36
    Developmental Gene Expression 3
    Gene Ontology 6
    Phenotypes 5
  • Earliest
    J:35784 Scott LM, et al., E3, a hematopoietic-specific transcript directly regulated by the retinoic acid receptor alpha. Blood. 1996 Oct 1;88(7):2517-30
  • Latest
    J:221584 Quesnel-Vallieres M, et al., Essential roles for the splicing regulator nSR100/SRRM4 during nervous system development. Genes Dev. 2015 Apr 1;29(7):746-59

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory