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Clta Gene Detail
Summary
  • Symbol
    Clta
  • Name
    clathrin, light polypeptide (Lca)
  • Feature Type
    protein coding gene
  • IDs
    MGI:894297
    NCBI Gene: 12757
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:44004452-44032846 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 23.09 cM, cytoband B1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    283 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_894297
protein coding gene Chr4:44003816-44032848 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028231
protein coding gene Chr4:42142142-42173635 (+)
A/J MGP_AJ_G0028188
protein coding gene Chr4:40649161-40678872 (+)
AKR/J MGP_AKRJ_G0028140
protein coding gene Chr4:41601366-41630688 (+)
BALB/cJ MGP_BALBcJ_G0028208
protein coding gene Chr4:40745498-40774763 (+)
C3H/HeJ MGP_C3HHeJ_G0027930
protein coding gene Chr4:42213554-42243842 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028649
protein coding gene Chr4:43751725-43779934 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025959
protein coding gene Chr4:38076574-38106281 (+)
CAST/EiJ MGP_CASTEiJ_G0027369
protein coding gene Chr4:41735456-41763361 (+)
CBA/J MGP_CBAJ_G0027896
protein coding gene Chr4:45099173-45129806 (+)
DBA/2J MGP_DBA2J_G0028045
protein coding gene Chr4:40557937-40586499 (+)
FVB/NJ MGP_FVBNJ_G0028012
protein coding gene Chr4:39788945-39818214 (+)
LP/J MGP_LPJ_G0028144
protein coding gene Chr4:42222018-42250074 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028036
protein coding gene Chr4:48300135-48330066 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028685
protein coding gene Chr4:41816461-41844083 (+)
PWK/PhJ MGP_PWKPhJ_G0027093
protein coding gene Chr4:40608290-40636479 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026922
protein coding gene Chr4:41337897-41373249 (+)
WSB/EiJ MGP_WSBEiJ_G0027447
protein coding gene Chr4:41690272-41718659 (+)



Homology
more
  • Human Ortholog
    CLTA, clathrin light chain A
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CLTA, clathrin light chain A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    LCA
  • Links
    NCBI Gene ID: 1211
    neXtProt AC: NX_P09496
    UniProt: P09496

  • Chr Location
    9p13.3; chr9:36190856-36212062 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028478 Ensembl Gene Model | MGI Sequence Detail 28395 C57BL/6J ±  kb
transcript ENSMUST00000107851 Ensembl | MGI Sequence Detail 1135 Not Applicable  
polypeptide ENSMUSP00000103483 Ensembl | MGI Sequence Detail 248 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 284
    cDNA 284

    Microarray probesets 5
Other
Accession IDs
less
MGI:2140516
References
more
  • Summaries
    All 39
    Developmental Gene Expression 3
    Gene Ontology 7
    Phenotypes 5
  • Earliest
    J:35784 Scott LM, et al., E3, a hematopoietic-specific transcript directly regulated by the retinoic acid receptor alpha. Blood. 1996 Oct 1;88(7):2517-30
  • Latest
    J:235591 Wu S, et al., Clathrin light chains' role in selective endocytosis influences antibody isotype switching. Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):9816-21

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory