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H2-Bl Pseudogene Detail
Summary
  • Symbol
    H2-Bl
  • Name
    histocompatibility 2, blastocyst
  • Synonyms
    blastocyst MHC
  • Feature Type
    polymorphic pseudogene
  • IDs
    MGI:892004
    NCBI Gene: 14963
  • Gene Overview
    MyGene.info: HLA-A
Location & Maps
more
  • Sequence Map
    Chr17:36080115-36084223 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      4109 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    HLA-A, major histocompatibility complex, class I, A
  • Vertebrate Orthologs
    57
  • Human Ortholog
    HLA-A, major histocompatibility complex, class I, A
    Orthology source: HomoloGene
  • Synonyms
    Aw-33, Aw-74, HLAA
  • Links
    NCBI Gene ID: 3105
    neXtProt AC: NX_P04439, NX_P30443

  • Chr Location
    6p21.3; chr6:29942470-29945884 (+)  GRCh38.p2

Human Diseases
more
  • Diseases
    1 with human HLA-A associations

Human Disease Mouse Models
       Severe Cutaneous Adverse Reaction, Susceptibility to   OMIM: 608579
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype reference
  • All Mutations and Alleles
    1
  • Targeted
    1
  • Genomic Mutations
    1 involving H2-Bl
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037291 VEGA Gene Model | MGI Sequence Detail 4109 C57BL/6J ±  kb
transcript OTTMUST00000096210 VEGA | MGI Sequence Detail 1138 Not Applicable  
polypeptide OTTMUSP00000053727 VEGA | MGI Sequence Detail 349 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    2 from dbSNP Build 142
Protein
Information
less
  • UniProt
    12 Sequences
  • InterPro Domains
    IPR003597 Immunoglobulin C1-set
    IPR007110 Immunoglobulin-like domain
    IPR013783 Immunoglobulin-like fold
    IPR003006 Immunoglobulin/major histocompatibility complex, conserved site
    IPR011162 MHC classes I/II-like antigen recognition protein
    IPR027648 MHC class I alpha chain
    IPR001039 MHC class I alpha chain, alpha1 alpha2 domains
    IPR011161 MHC class I-like antigen recognition-like
Molecular
Reagents
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  • All nucleic 7
    Genomic 2
    cDNA 4
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 13
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:37998 Sipes SL, et al., A new major histocompatibility complex class I b gene expressed in the mouse blastocyst and placenta. Immunogenetics. 1996;45(2):108-20
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
05/17/2016
MGI 6.03
The Jackson Laboratory