About   Help   FAQ
Cox5b
Gene Detail
 Symbol
Name
ID
Cox5b
cytochrome c oxidase subunit Vb
MGI:88475
Feature Type protein coding gene
Genetic Map
Chromosome 1
15.38 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr1:36691487-36693385 bp, + strand
From Ensembl annotation of GRCm38

  1899 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:133751  Vertebrate Homology Class
1 mouse; 1 western clawed frog; 1 zebrafish

Gene Tree: Cox5b

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(3) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Cox5b interacts with 16 markers (Mir19b-1, Mir19b-2, Mir28c, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (2 annotations)
Component mitochondrial inner membrane, mitochondrion
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (110)    Tissues (104)    Images (15)
Theiler Stages: 1, 2, 3, 4, 5, 22, 28
Assay TypeResults
Immunohistochemistry 4
RNA in situ 94
RT-PCR 12
cDNA source data(6)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(11) Genomic(4) cDNA(6) Primer pair(1)
Microarray probesets(6)
Other database
links
Ensembl Gene ModelENSMUSG00000061518 (Evidence)
Entrez Gene12859 (Evidence)
DFCITC1572049
DoTSDT.101370536, DT.101720566, DT.94134232, DT.94374374
Consensus CDS ProjectCCDS14886.1
International Mouse Knockout Project StatusCox5b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000061518 Ensembl Gene Model | MGI Sequence Detail 1899 C57BL/6J ±  kb
transcript ENSMUST00000081180 Ensembl | MGI Sequence Detail 566 Not Applicable 
polypeptide ENSMUSP00000079944 Ensembl | MGI Sequence Detail 129 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(2)
Polymorphisms SNPs within 2kb(48 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000005780 cytochrome c oxidase subunit 5B, mitochondrial
References (Earliest) J:10015 Nielsen PJ, et al., Nucleotide sequence of cDNA encoding mouse cytochrome c oxidase subunit Va. Nucleic Acids Res. 1989 Aug 25;17(16):6723
(Latest) J:198125 Rajakumari S, et al., EBF2 determines and maintains brown adipocyte identity. Cell Metab. 2013 Apr 2;17(4):562-74
All references(39)
Other
accession IDs
MGD-MRK-2099

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
09/23/2014
MGI 5.19
The Jackson Laboratory