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Cox5b
Gene Detail
Symbol

Name
ID
Cox5b
cytochrome c oxidase subunit Vb
MGI:88475
Feature Type
protein coding gene
Genetic Map
Chromosome 1
15.38 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr1:36691484-36693681 bp, + strand
From VEGA annotation of GRCm38

  2198 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:133751  Vertebrate Homology Class
2 mouse; 1 western clawed frog; 1 zebrafish

Gene Tree: Cox5b

Mutations,
alleles, and
phenotypes
All mutations/alleles(7) : Gene trapped(3) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Cox5b interacts with 16 markers (Mir19b-1, Mir19b-2, Mir28c, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (2 annotations)
Component mitochondrial inner membrane, mitochondrion
External Resources: FuncBase
Expression
Literature Summary: (6 records)
Data Summary: Results (110)    Tissues (104)    Images (15)    Tissue x Stage Matrix (view)
Assay TypeResults
Immunohistochemistry 4
RNA in situ 94
RT-PCR 12
cDNA source data(6)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(11) Genomic(4) cDNA(6) Primer pair(1)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000049480 (Evidence)
Ensembl Gene ModelENSMUSG00000061518 (Evidence)
Entrez Gene12859 (Evidence)
DFCITC1572049
DoTSDT.101370536, DT.101720566, DT.94134232, DT.94374374
Consensus CDS ProjectCCDS14886.1
International Mouse Knockout Project StatusCox5b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000049480 VEGA Gene Model | MGI Sequence Detail 2198 C57BL/6J ±  kb
transcript OTTMUST00000126138 VEGA | MGI Sequence Detail 865 Not Applicable 
polypeptide OTTMUSP00000068266 VEGA | MGI Sequence Detail 129 Not Applicable 

For the selected sequences
All sequences(40) RefSeq(2)
Polymorphisms
SNPs within 2kb(49 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000005780 cytochrome c oxidase subunit 5B, mitochondrial
References
(Earliest) J:10015 Nielsen PJ, et al., Nucleotide sequence of cDNA encoding mouse cytochrome c oxidase subunit Va. Nucleic Acids Res. 1989 Aug 25;17(16):6723
(Latest) J:213153 Harms MJ, et al., Prdm16 is required for the maintenance of brown adipocyte identity and function in adult mice. Cell Metab. 2014 Apr 1;19(4):593-604
All references(43)
Other
accession IDs
MGD-MRK-2099

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/12/2015
MGI 5.21
The Jackson Laboratory