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Col9a2
Gene Detail
 Symbol
Name
ID
Col9a2
collagen, type IX, alpha 2
MGI:88466
Synonyms Col9a-2
Feature Type protein coding gene
Genetic Map
Chromosome 4
56.78 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:121039385-121055322 bp, + strand
From VEGA annotation of GRCm38

  15938 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:37535  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Col9a2

Human
homologs
Human Homolog COL9A2, collagen, type IX, alpha 2
NCBI Gene ID 1298
neXtProt AC  NX_Q14055
Human Synonyms  DJ39G22.4, EDM2, MED, STL5
Human Chr (Location)  1p33-p32; chr1:40300490-40317693 (-)  GRCh38
Disease Associations  (3) Diseases Associated with Human COL9A2
Alleles
and
phenotypes
All alleles(12) : Gene trapped(9) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Component collagen trimer, collagen type IX trimer, ...
External Resources: FuncBase
Expression
Literature Summary: (15 records)
Data Summary: Results (165)    Tissues (51)    Images (38)
Theiler Stages: 19, 20, 21, 22, 23, 28
Assay TypeResults
RNA in situ 159
RT-PCR 6
cDNA source data(52)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(57) Genomic(3) cDNA(52) Primer pair(2)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000008902 (Evidence)
Ensembl Gene ModelENSMUSG00000028626 (Evidence)
Entrez Gene12840 (Evidence)
UniGene269384
DFCITC1577570
DoTSDT.94130892, DT.97372143
NIA Mouse Gene IndexU004755
Consensus CDS ProjectCCDS18599.1
International Mouse Knockout Project StatusCol9a2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000008902 VEGA Gene Model | MGI Sequence Detail 15938 C57BL/6J ±  kb
transcript OTTMUST00000020226 VEGA | MGI Sequence Detail 2924 Not Applicable 
polypeptide OTTMUSP00000009271 VEGA | MGI Sequence Detail 688 Not Applicable 

For the selected sequences
All sequences(34) RefSeq(2) UniProt(3)
Polymorphisms PCR(1) : SNPs within 2kb(165 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008160 Collagen triple helix repeat
Protein Ontology PR:000005723 collagen alpha-2(IX) chain
References (Earliest) J:717 Elima K, et al., Specific hybridization probes for mouse alpha 2(IX) and alpha 1(X) collagen mRNAs. Biochim Biophys Acta. 1992 Feb 28;1130(1):78-80
(Latest) J:198371 Brachvogel B, et al., Comparative proteomic analysis of normal and collagen IX null mouse cartilage reveals altered extracellular matrix composition and novel components of the collagen IX interactome. J Biol Chem. 2013 May 10;288(19):13481-92
All references(50)
Other
accession IDs
MGD-MRK-2084, MGD-MRK-2086, MGI:2140269

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory