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Col15a1
Gene Detail
 Symbol
Name
ID
Col15a1
collagen, type XV, alpha 1
MGI:88449
Feature Type protein coding gene
Genetic Map
Chromosome 4
26.01 cM, cytoband B1-B3
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr4:47208161-47313167 bp, + strand
From VEGA annotation of GRCm38

  105007 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:1396  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 zebrafish

Gene Tree: Col15a1

Human
homologs
Human Homolog COL15A1, collagen, type XV, alpha 1
NCBI Gene ID 1306
neXtProt AC  NX_P39059
Human Chr (Location)  9q21-q22; chr9:98943713-99070792 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
Homozygous mutation of this gene results in abnormal muscle cells of variable size (including atrophic and split muscle cells), susceptibility to exercise-induced muscle injury, and abnormalities in heart and skeletal muscle capillary endothelium.
 
Phenotype Images(2)
Interactions
Col15a1 interacts with 200 markers (Mir1a-1, Mir1a-2, Mir9-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process cell adhesion
Component basement membrane, collagen trimer, ...
Function structural molecule activity
External Resources: FuncBase
Expression
Literature Summary: (11 records)
Data Summary: Results (220)    Tissues (40)    Images (46)
Theiler Stages: 10, 18, 21, 22, 23, 24, 25, 26, 27, 28
Assay TypeResults
RNA in situ 205
Northern blot 12
RT-PCR 3
cDNA source data(96)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(100) Genomic(2) cDNA(97) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000006798 (Evidence)
Ensembl Gene ModelENSMUSG00000028339 (Evidence)
Entrez Gene12819 (Evidence)
UniGene233547
DFCITC1576508, TC1667853
DoTSDT.101172590, DT.101389520, DT.492086, DT.94294806, DT.94294810
NIA Mouse Gene IndexU004297
PDB1DY2
Consensus CDS ProjectCCDS18159.1
International Mouse Knockout Project StatusCol15a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000006798 VEGA Gene Model | MGI Sequence Detail 105007 C57BL/6J ±  kb
transcript OTTMUST00000015661 VEGA | MGI Sequence Detail 5172 Not Applicable 
polypeptide OTTMUSP00000007202 VEGA | MGI Sequence Detail 1367 Not Applicable 

For the selected sequences
All sequences(64) RefSeq(8) UniProt(6)
Polymorphisms SNPs within 2kb(510 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR010515 Collagenase NC10/endostatin
InterPro IPR008160 Collagen triple helix repeat
InterPro IPR008985 Concanavalin A-like lectin/glucanases superfamily
InterPro IPR013320 Concanavalin A-like lectin/glucanase, subgroup
InterPro IPR016187 C-type lectin fold
InterPro IPR016186 C-type lectin-like
InterPro IPR001791 Laminin G domain
Protein Ontology PR:000005699 collagen alpha-1(XV) chain
References (Earliest) J:15411 Abe N, et al., Identification of a novel collagen chain represented by extensive interruptions in the triple-helical region. Biochem Biophys Res Commun. 1993 Oct 29;196(2):576-82
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(48)
Other
accession IDs
MGD-MRK-2056

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/26/2014
MGI 5.19
The Jackson Laboratory