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Cnbp Gene Detail
Summary
  • Symbol
    Cnbp
  • Name
    cellular nucleic acid binding protein
  • Synonyms
    Znf9
  • Feature Type
    protein coding gene
  • IDs
    MGI:88431
    NCBI Gene: 12785
  • Gene Overview
    MyGene.info: CNBP
Location & Maps
more
  • Sequence Map
    Chr6:87842615-87851106 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      8492 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 39.13 cM, cytoband D1-D2
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    CNBP, CCHC-type zinc finger nucleic acid binding protein
  • Vertebrate Orthologs
    9
  • Human Ortholog
    CNBP, CCHC-type zinc finger nucleic acid binding protein
    Orthology source: HGNC, HomoloGene
  • Synonyms
    CNBP1, DM2, PROMM, RNF163, ZCCHC22, ZNF9
  • Links
    NCBI Gene ID: 7555
    neXtProt AC: NX_P62633

  • Chr Location
    3q21; chr3:129167815-129183967 (-)  GRCh38.p2

Human Diseases
more
  • Diseases
    1 with human CNBP associations

Human Disease Mouse Models
       Myotonic Dystrophy 2; DM2   OMIM: 602668
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    18 phenotypes from 2 alleles in 2 genetic backgrounds
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    94
  • Gene trapped
    88
  • Spontaneous
    1
  • Targeted
    4
  • Transgenic
    1
  • Genomic Mutations
    1 involving Cnbp
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023465 VEGA Gene Model | MGI Sequence Detail 8492 C57BL/6J ±  kb
transcript OTTMUST00000057063 VEGA | MGI Sequence Detail 2175 Not Applicable  
polypeptide OTTMUSP00000027487 VEGA | MGI Sequence Detail 177 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    16 from dbSNP Build 142
Protein
Information
less
  • UniProt
    6 Sequences
  • Protein Ontology
    PR:000005627 cellular nucleic acid-binding protein
  • InterPro Domains
    IPR001878 Zinc finger, CCHC-type
Molecular
Reagents
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  • All nucleic 38
    Genomic 1
    cDNA 34
    Primer pair 3

    Microarray probesets 7
Other
Accession IDs
less
MGD-MRK-2033, MGI:2141361
References
more
  • Summaries
    All 54
    Developmental Gene Expression 17
    Gene Ontology 6
    Phenotypes 15
  • Earliest
    J:21465 Warden CH, et al., Mouse cellular nucleic acid binding proteins: a highly conserved family identified by genetic mapping and sequencing. Genomics. 1994 Nov 1;24(1):14-9
  • Latest
    J:209112 Shimizu H, et al., The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo. PLoS One. 2013;8(10):e75754

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory