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Chd1
Gene Detail
 Symbol
Name
ID
Chd1
chromodomain helicase DNA binding protein 1
MGI:88393
Synonyms 4930525N21Rik
Feature Type protein coding gene
Genetic Map
Chromosome 17
8.95 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr17:15704967-15772610 bp, + strand
From VEGA annotation of GRCm38

  67644 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:68174  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: chromodomain-helicase-DNA-binding protein
Gene Tree: Chd1

Human
homologs
Human Homolog CHD1, chromodomain helicase DNA binding protein 1
NCBI Gene ID 1105
neXtProt AC  NX_O14646
Human Chr (Location)  5q15-q21; chr5:98855204-98928815 (-)  GRCh38
Alleles
and
phenotypes
All alleles(36) : Gene trapped(33) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (16 annotations)
Process chromatin assembly or disassembly, chromatin modification, ...
Component cytoplasm, nucleus
Function ATP binding, chromatin binding, ...
External Resources: FuncBase
Expression
cDNA source data(112)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(113) cDNA(113)
Microarray probesets(7)
Other database
links
VEGA Gene ModelOTTMUSG00000038131 (Evidence)
Ensembl Gene ModelENSMUSG00000023852 (Evidence)
Entrez Gene12648 (Evidence)
UniGene8137
DFCITC1579202, TC1592591, TC1599435, TC1683151, TC1685687
DoTSDT.102556974, DT.110575505, DT.490771, DT.521858
NIA Mouse Gene IndexU017531, U369079
EC3.6.4.12
Consensus CDS ProjectCCDS28416.1
International Mouse Knockout Project StatusChd1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000038131 VEGA Gene Model | MGI Sequence Detail 67644 C57BL/6J ±  kb
transcript OTTMUST00000098202 VEGA | MGI Sequence Detail 7916 Not Applicable 
polypeptide OTTMUSP00000055141 VEGA | MGI Sequence Detail 1711 Not Applicable 

For the selected sequences
All sequences(59) RefSeq(2) UniProt(9)
Polymorphisms SNPs within 2kb(271 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR023780 Chromo domain
InterPro IPR023779 Chromo domain, conserved site
InterPro IPR016197 Chromo domain-like
InterPro IPR000953 Chromo domain/shadow
InterPro IPR025260 Domain of unknown function DUF4208
InterPro IPR001650 Helicase, C-terminal
InterPro IPR014001 Helicase, superfamily 1/2, ATP-binding domain
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR000330 SNF2-related
Protein Ontology PR:000005406 chromodomain-helicase-DNA-binding protein 1
References (Earliest) J:4182 Delmas V, et al., A mammalian DNA-binding protein that contains a chromodomain and an SNF2/SWI2-like helicase domain. Proc Natl Acad Sci U S A. 1993 Mar 15;90(6):2414-8
(Latest) J:177428 Lin JJ, et al., Mediator coordinates PIC assembly with recruitment of CHD1. Genes Dev. 2011 Oct 15;25(20):2198-209
All references(46)
Other
accession IDs
MGD-MRK-1968, MGI:1922369, MGI:2146939, MGI:2147088

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory