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Cdr1 Gene Detail
Summary
  • Symbol
    Cdr1
  • Name
    cerebellar degeneration related antigen 1
  • Synonyms
    Cdr34, Gm2409, Gm7077
Location &
Maps
more
  • Sequence Map
    ChrX:60227611-60229164 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 34.33 cM
  • Mapping Data
    7 experiments
Strain
Comparison
more
  • SNPs within 2kb
    13 from dbSNP Build 142
  • Strain Annotations
    17
  • RFLP
    2
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_88359
 protein coding gene ChrX:60226838-60239449 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035760
 protein coding gene ChrX:56591786-56594290 (-)
A/J MGP_AJ_G0035742
 protein coding gene ChrX:56787712-56790236 (-)
AKR/J MGP_AKRJ_G0035662
 protein coding gene ChrX:58305699-58307033 (-)
BALB/cJ MGP_BALBcJ_G0035729
 protein coding gene ChrX:56128679-56129983 (-)
C3H/HeJ MGP_C3HHeJ_G0035431
 protein coding gene ChrX:57152835-57155129 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036258
 protein coding gene ChrX:58102425-58104929 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033110
 protein coding gene ChrX:56575146-56577260 (-)
CAST/EiJ MGP_CASTEiJ_G0034724
 protein coding gene ChrX:42908615-42911259 (-)
CBA/J MGP_CBAJ_G0035406
 protein coding gene ChrX:59850391-59852925 (-)
DBA/2J MGP_DBA2J_G0035560
 protein coding gene ChrX:56343617-56345841 (-)
FVB/NJ MGP_FVBNJ_G0035510
 protein coding gene ChrX:55881895-55884279 (-)
LP/J MGP_LPJ_G0035648
 protein coding gene ChrX:57167089-57169893 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035546
 protein coding gene ChrX:61420125-61421529 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036274
 protein coding gene ChrX:56629501-56632005 (-)
PWK/PhJ MGP_PWKPhJ_G0034419
 protein coding gene ChrX:41061236-41063900 (-)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0034867
 protein coding gene ChrX:56080899-56083483 (-)



Homology
more
  • Human Ortholog
    CDR1, cerebellar degeneration related 1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CDR1, cerebellar degeneration related 1
  • Synonyms
    CDR, CDR34, CDR62A
  • Links
    NCBI Gene ID: 1038
    neXtProt AC: NX_P51861
    UniProt: P51861

  • Chr Location
    Xq27.1; chrX:140772083-140793212 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    713
  • Tissues
    2
  • cDNA Data
    5
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090546 Ensembl Gene Model | MGI Sequence Detail 1554 C57BL/6J ±  kb
transcript ENSMUST00000166381 Ensembl | MGI Sequence Detail 1554 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 8
    cDNA 7
    Other 1
Other
Accession IDs
less
MGD-MRK-1886, MGD-MRK-1887, MGI:3644361, MGI:3780577
References
more
  • Summaries
    All 18
    Developmental Gene Expression 2
  • Earliest
    J:10431 Chen YT, et al., Cerebellar degeneration-related antigen: a highly conserved neuroectodermal marker mapped to chromosomes X in human and mouse. Proc Natl Acad Sci U S A. 1990 Apr;87(8):3077-81
  • Latest
    J:307672 Knupp D, et al., NOVA2 regulates neural circRNA biogenesis. Nucleic Acids Res. 2021 Jul 9;49(12):6849-6862
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory