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Chrnb4 Gene Detail
Summary
  • Symbol
    Chrnb4
  • Name
    cholinergic receptor, nicotinic, beta polypeptide 4
  • Synonyms
    Acrb4, Acrb-4
  • Feature Type
    protein coding gene
  • IDs
    MGI:87892
    NCBI Gene: 108015
  • Gene Overview
    MyGene.info: CHRNB4
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:55028154-55048779 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 29.84 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    183 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_87892
protein coding gene Chr9:55028154-55048953 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034837
protein coding gene Chr9:54107625-54128778 (-)
A/J MGP_AJ_G0034818
protein coding gene Chr9:52367815-52388676 (-)
AKR/J MGP_AKRJ_G0034747
protein coding gene Chr9:53566719-53586944 (-)
BALB/cJ MGP_BALBcJ_G0034810
protein coding gene Chr9:52147435-52167910 (-)
C3H/HeJ MGP_C3HHeJ_G0034520
protein coding gene Chr9:54026581-54049115 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035329
protein coding gene Chr9:55608396-55630831 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032241
protein coding gene Chr9:51781813-51802722 (-)
CAST/EiJ MGP_CASTEiJ_G0033842
protein coding gene Chr9:54050315-54081953 (-)
CBA/J MGP_CBAJ_G0034491
protein coding gene Chr9:57548009-57568151 (-)
DBA/2J MGP_DBA2J_G0034650
protein coding gene Chr9:52264346-52284566 (-)
FVB/NJ MGP_FVBNJ_G0034592
protein coding gene Chr9:51465599-51489226 (-)
LP/J MGP_LPJ_G0034733
protein coding gene Chr9:54413589-54434164 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034635
protein coding gene Chr9:59061999-59089987 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035351
protein coding gene Chr9:53583434-53603746 (-)
PWK/PhJ MGP_PWKPhJ_G0033546
protein coding gene Chr9:52244764-52265634 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033381
protein coding gene Chr9:53846882-53868271 (-)
WSB/EiJ MGP_WSBEiJ_G0033954
protein coding gene Chr9:53546635-53566821 (-)



Homology
more
  • Human Ortholog
    CHRNB4, cholinergic receptor nicotinic beta 4 subunit
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CHRNB4, cholinergic receptor nicotinic beta 4 subunit
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 1143
    neXtProt AC: NX_P30926
    UniProt: P30926

  • Chr Location
    15q25.1; chr15:78623282-78655586 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 20196
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CHRNB4
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    3 phenotypes from 1 allele in 2 genetic backgrounds
    21 phenotypes from multigenic genotypes
    26 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous mutation of this gene results in hyperplasia of the bladder and altered bladder contractility. Mutant mice also exhibit a resistance to nicotine-induced seizures.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
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    Sequences &
    Gene Models
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    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000035200 Ensembl Gene Model | MGI Sequence Detail 20626 C57BL/6J ±  kb
    transcript ENSMUST00000034854 Ensembl | MGI Sequence Detail 3723 Not Applicable  
    polypeptide ENSMUSP00000034854 Ensembl | MGI Sequence Detail 495 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      3 Sequences
    • Protein Ontology
      PR:000005465 neuronal acetylcholine receptor subunit beta-4
    • InterPro Domains
      IPR006201 Neurotransmitter-gated ion-channel
      IPR018000 Neurotransmitter-gated ion-channel, conserved site
      IPR006202 Neurotransmitter-gated ion-channel ligand-binding domain
      IPR036734 Neurotransmitter-gated ion-channel ligand-binding domain superfamily
      IPR006029 Neurotransmitter-gated ion-channel transmembrane domain
      IPR036719 Neurotransmitter-gated ion-channel transmembrane domain superfamily
      IPR002394 Nicotinic acetylcholine receptor
    Molecular
    Reagents
    less
    • All nucleic 25
      cDNA 21
      Primer pair 2
      Other 2

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGD-MRK-1065, MGD-MRK-1067
    References
    more
    • Summaries
      All 69
      Developmental Gene Expression 9
      Gene Ontology 13
      Phenotypes 26
    • Earliest
      J:11050 Eng CM, et al., Mapping of multiple subunits of the neuronal nicotinic acetylcholine receptor to chromosome 15 in man and chromosome 9 in mouse. Genomics. 1991 Feb;9(2):278-82
    • Latest
      J:242831 Kamens HM, et al., No evidence of a role of the beta4 subunit of the nicotinic acetylcholine receptor in alcohol-related behaviors. BMC Res Notes. 2017 Apr 05;10(1):151

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory