Gm49952 Pseudogene Detail

Summary

• Symbol
  Gm49952
• Name
  predicted gene, 49952

• Feature Type
  pseudogene
• IDs
  MGI:6270672
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:23634515-23634752 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  50 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6270672	pseudogene	Chr17:23634515-23634752 (+)
129S1/SvImJ	ENSMUSG00200038662	pseudogene	Chr17:19064393-19064630 (+)
A/J	ENSMUSG00195039393	pseudogene	Chr17:20082584-20082821 (+)
AKR/J	ENSMUSG00220026439	pseudogene	Chr17:19130853-19131090 (+)
BALB/cJ	ENSMUSG00180019305	pseudogene	Chr17:19365189-19365426 (+)
C3H/HeJ	ENSMUSG00175045504	pseudogene	Chr17:19145608-19145845 (+)
C57BL/6NJ	ENSMUSG00215043300	pseudogene	Chr17:19142206-19142443 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023432	pseudogene	Chr17:19733582-19733819 (+)
CBA/J	ENSMUSG00210040966	pseudogene	Chr17:18984481-18984718 (+)
DBA/2J	ENSMUSG00185054057	pseudogene	Chr17:21171425-21171662 (+)
FVB/NJ	ENSMUSG00205038673	pseudogene	Chr17:19514831-19515068 (+)
JF1/MsJ	ENSUMUG00000057691	pseudogene	Chr17:20649597-20649834 (+)
LP/J	ENSMUSG00230055131	pseudogene	Chr17:22569342-22569579 (+)
NOD/ShiLtJ	ENSMUSG00190039098	pseudogene	Chr17:19062918-19063155 (+)
NZO/HlLtJ	ENSMUSG00225054803	pseudogene	Chr17:24492410-24492647 (+)
PWK/PhJ	ENSLUMG00010021745	pseudogene	Chr17:18582691-18582928 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005043032	pseudogene	Chr17:19807479-19807716 (+)

Homology

• Gene Tree
  Gm49952
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000117159 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117159	Ensembl Gene Model | MGI Sequence Detail	238	C57BL/6J
transcript	ENSMUST00000233682	Ensembl | MGI Sequence Detail	238	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;