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Gm49885 Gene Detail
Summary
  • Symbol
    Gm49885
  • Name
    predicted gene, 49885
  • Feature Type
    lncRNA gene
  • IDs
    MGI:6270568
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr6:41058521-41068917 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 6, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    117 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_6270568
lncRNA gene Chr6:41058521-41068917 (+)
129S1/SvImJ MGP_129S1SvImJ_G0037116
sense overlapping lncRNA gene Chr6:39556711-39568481 (+)
A/J MGP_AJ_G0037103
sense overlapping lncRNA gene Chr6:37835313-37845825 (+)
AKR/J MGP_AKRJ_G0037051
sense overlapping lncRNA gene Chr6:39036661-39046958 (+)
BALB/cJ MGP_BALBcJ_G0037094
sense overlapping lncRNA gene Chr6:38047895-38058221 (+)
C3H/HeJ MGP_C3HHeJ_G0036781
sense overlapping lncRNA gene Chr6:39058908-39069174 (+)
C57BL/6NJ MGP_C57BL6NJ_G0037608
sense overlapping lncRNA gene Chr6:40548171-40558460 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0034651
sense overlapping lncRNA gene Chr6:35626996-35633955 (+)
CAST/EiJ MGP_CASTEiJ_G0035968
sense overlapping lncRNA gene Chr6:38958566-38963757 (+)
CBA/J MGP_CBAJ_G0036756
sense overlapping lncRNA gene Chr6:42176943-42187996 (+)
DBA/2J MGP_DBA2J_G0036931
sense overlapping lncRNA gene Chr6:37649659-37660398 (+)
FVB/NJ no annotation
LP/J MGP_LPJ_G0036978
sense overlapping lncRNA gene Chr6:39567671-39577982 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0036889
sense overlapping lncRNA gene Chr6:44424718-44439262 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0037725
sense overlapping lncRNA gene Chr6:39001479-39011798 (+)
PWK/PhJ MGP_PWKPhJ_G0035662
sense overlapping lncRNA gene Chr6:37276804-37284344 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0036170
sense overlapping lncRNA gene Chr6:38944492-38954743 (+)



Homology
less
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000103833 Ensembl Gene Model | MGI Sequence Detail 10397 C57BL/6J ±  kb
transcript ENSMUST00000191867 Ensembl | MGI Sequence Detail 620 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 1
  • Earliest
    J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/19/2024
MGI 6.23
The Jackson Laboratory