Gm49405 Gene Detail

Summary

• Symbol
  Gm49405
• Name
  predicted gene, 49405

• Feature Type
  protein coding gene
• IDs
  MGI:6155029
  NCBI Gene: 134756354
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:4050626-4055816 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  41 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6155029	protein coding gene	Chr19:4050626-4055816 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0024638	protein coding gene	Chr19:819264-824504 (+)
A/J	MGP_AJ_G0024606	protein coding gene	Chr19:778929-784857 (+)
AKR/J	MGP_AKRJ_G0024577	protein coding gene	Chr19:809447-814617 (+)
BALB/cJ	MGP_BALBcJ_G0024604	protein coding gene	Chr19:790646-795871 (+)
C3H/HeJ	MGP_C3HHeJ_G0024372	protein coding gene	Chr19:808864-815014 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0025052	protein coding gene	Chr19:827928-833184 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0022481	protein coding gene	Chr19:743986-749293 (+)
CAST/EiJ	MGP_CASTEiJ_G0023844	protein coding gene	Chr19:821810-827080 (+)
CBA/J	MGP_CBAJ_G0024343	protein coding gene	Chr19:908862-914114 (+)
DBA/2J	MGP_DBA2J_G0024471	protein coding gene	Chr19:757350-762586 (+)
FVB/NJ	MGP_FVBNJ_G0024438	protein coding gene	Chr19:770135-775609 (+)
LP/J	MGP_LPJ_G0024558	protein coding gene	Chr19:819555-824755 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0024469	protein coding gene	Chr19:863465-868708 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0025100	protein coding gene	Chr19:802247-807505 (+)
PWK/PhJ	MGP_PWKPhJ_G0023591	protein coding gene	Chr19:795137-800436 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0023397	protein coding gene	Chr19:799528-804796 (+)
WSB/EiJ	MGP_WSBEiJ_G0023907	protein coding gene	Chr19:794493-800405 (+)

Homology

• Gene Tree
  Gm49405
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000024869 (Evidence)
• NCBI Gene
  134756354

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000024869	Ensembl Gene Model | MGI Sequence Detail	5191	C57BL/6J
transcript	ENSMUST00000155405	Ensembl | MGI Sequence Detail	3904	Not Applicable
polypeptide	ENSMUSP00000119218	Ensembl | MGI Sequence Detail	210	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• EC
  3.6.1.-
• InterPro Domains
  IPR045121 Coenzyme A pyrophosphatase
  IPR000086 NUDIX hydrolase domain
  IPR015797 NUDIX hydrolase-like domain superfamily

References

• Summaries
  All 3
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49405:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154248	Chr19:4050582-4050659 (+)	-5 bp