Gm49340 Gene Detail

Summary

• Symbol
  Gm49340
• Name
  predicted gene, 49340

• Feature Type
  protein coding gene
• IDs
  MGI:6121532
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:73220567-73246739 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  56 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6121532	protein coding gene	Chr11:73220567-73246739 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0018661	protein coding gene	Chr11:74015081-74048611 (+)
A/J	MGP_AJ_G0018629	protein coding gene	Chr11:71240795-71267528 (+)
AKR/J	MGP_AKRJ_G0018598	protein coding gene	Chr11:73418961-73444514 (+)
BALB/cJ	MGP_BALBcJ_G0018601	protein coding gene	Chr11:71541781-71568745 (+)
C3H/HeJ	MGP_C3HHeJ_G0018414	protein coding gene	Chr11:73372858-73399340 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0019052	protein coding gene	Chr11:76265654-76304384 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0016695	protein coding gene	Chr11:68044213-68073434 (+)
CAST/EiJ	MGP_CASTEiJ_G0017969	protein coding gene	Chr11:73750217-73781569 (+)
CBA/J	MGP_CBAJ_G0018386	protein coding gene	Chr11:79626148-79662910 (+)
DBA/2J	MGP_DBA2J_G0018495	protein coding gene	Chr11:70865514-70891614 (+)
FVB/NJ	MGP_FVBNJ_G0018486	protein coding gene	Chr11:70412422-70436679 (+)
LP/J	MGP_LPJ_G0018566	protein coding gene	Chr11:74532234-74559334 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0018509	protein coding gene	Chr11:80132690-80153753 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0019094	protein coding gene	Chr11:73591607-73620583 (+)
PWK/PhJ	MGP_PWKPhJ_G0017742	protein coding gene	Chr11:71512384-71538316 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0017532	protein coding gene	Chr11:73315068-73333901 (+)
WSB/EiJ	MGP_WSBEiJ_G0018023	protein coding gene	Chr11:73353459-73385227 (+)

Homology

• Gene Tree
  Gm49340
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000069825 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000069825	Ensembl Gene Model | MGI Sequence Detail	26173	C57BL/6J
transcript	ENSMUST00000117445	Ensembl | MGI Sequence Detail	3200	Not Applicable
polypeptide	ENSMUSP00000113799	Ensembl | MGI Sequence Detail	311	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR033536 Spermatogenesis-associated protein 22

References

• Summaries
  All 2
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm49340:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102895	Chr11:73220553-73220574 (+)	-3 bp