Gm44980 Pseudogene Detail

Summary

• Symbol
  Gm44980
• Name
  predicted gene 44980

• Feature Type
  pseudogene
• IDs
  MGI:5753556
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:98086413-98086726 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753556	pseudogene	Chr7:98086413-98086726 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013970	pseudogene	Chr7:101165207-101165520 (-)
A/J	MGP_AJ_G0013989	pseudogene	Chr7:98670562-98670875 (-)
AKR/J	MGP_AKRJ_G0013923	pseudogene	Chr7:101016277-101016590 (-)
BALB/cJ	MGP_BALBcJ_G0013945	pseudogene	Chr7:98358517-98358830 (-)
C3H/HeJ	MGP_C3HHeJ_G0013780	pseudogene	Chr7:101367468-101367781 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014378	pseudogene	Chr7:105086596-105086909 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012224	pseudogene	Chr7:101106678-101106991 (-)
CAST/EiJ	MGP_CASTEiJ_G0013438	pseudogene	Chr7:92886828-92887141 (-)
CBA/J	MGP_CBAJ_G0013758	pseudogene	Chr7:108670984-108671297 (-)
DBA/2J	MGP_DBA2J_G0013837	pseudogene	Chr7:97002706-97003019 (-)
FVB/NJ	MGP_FVBNJ_G0013841	pseudogene	Chr7:96803162-96803475 (-)
LP/J	MGP_LPJ_G0013912	pseudogene	Chr7:102496342-102496655 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013867	pseudogene	Chr7:110193349-110193662 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014339	pseudogene	Chr7:100283281-100283594 (-)
PWK/PhJ	MGP_PWKPhJ_G0013252	pseudogene	Chr7:90083311-90083624 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013018	pseudogene	Chr7:87560869-87561179 (-)
WSB/EiJ	MGP_WSBEiJ_G0013500	pseudogene	Chr7:100942311-100942624 (-)

Homology

• Gene Tree
  Gm44980
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000108346 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108346	Ensembl Gene Model | MGI Sequence Detail	314	C57BL/6J
transcript	ENSMUST00000205826	Ensembl | MGI Sequence Detail	314	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;