Gm44957 Gene Detail

Summary

• Symbol
  Gm44957
• Name
  predicted gene 44957

• Feature Type
  lncRNA gene
• IDs
  MGI:5753533
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:116312194-116314910 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  10 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5753533	lncRNA gene	Chr6:116312194-116314910 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015645	unclassified non-coding RNA gene	Chr6:118999915-119002629 (-)
A/J	MGP_AJ_G0015621	unclassified non-coding RNA gene	Chr6:114437010-114439726 (-)
AKR/J	MGP_AKRJ_G0015584	unclassified non-coding RNA gene	Chr6:117490795-117494737 (-)
BALB/cJ	MGP_BALBcJ_G0015583	unclassified non-coding RNA gene	Chr6:114241970-114244686 (-)
C3H/HeJ	MGP_C3HHeJ_G0015397	unclassified non-coding RNA gene	Chr6:66793378-66797320 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016036	unclassified non-coding RNA gene	Chr6:122061301-122064017 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013769	unclassified non-coding RNA gene	Chr6:111436994-111441146 (-)
CAST/EiJ	MGP_CASTEiJ_G0014961	unclassified non-coding RNA gene	Chr6:117888696-117892680 (-)
CBA/J	MGP_CBAJ_G0015386	unclassified non-coding RNA gene	Chr6:126834815-126838757 (-)
DBA/2J	MGP_DBA2J_G0015480	unclassified non-coding RNA gene	Chr6:113350654-113353368 (-)
FVB/NJ	MGP_FVBNJ_G0015487	unclassified non-coding RNA gene	Chr6:112540249-112544699 (-)
LP/J	MGP_LPJ_G0015561	unclassified non-coding RNA gene	Chr6:119009219-119011933 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015510	unclassified non-coding RNA gene	Chr6:130979668-130982382 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016078	unclassified non-coding RNA gene	Chr6:117537230-117539944 (-)
PWK/PhJ	MGP_PWKPhJ_G0014744	unclassified non-coding RNA gene	Chr6:112368930-112372871 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014532	unclassified non-coding RNA gene	Chr6:116275879-116280187 (-)
WSB/EiJ	MGP_WSBEiJ_G0015065	unclassified non-coding RNA gene	Chr6:117803831-117808223 (-)

Homology

• Gene Tree
  Gm44957
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000107497 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107497	Ensembl Gene Model | MGI Sequence Detail	2717	C57BL/6J
transcript	ENSMUST00000203361	Ensembl | MGI Sequence Detail	2230	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;