Gm44389 Pseudogene Detail

Summary

• Symbol
  Gm44389
• Name
  predicted gene, 44389

• Feature Type
  pseudogene
• IDs
  MGI:5690781
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:60438918-60439099 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  27 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690781	pseudogene	Chr6:60438918-60439099 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013477	pseudogene	Chr6:60215773-60215954 (-)
A/J	MGP_AJ_G0013463	pseudogene	Chr6:57553102-57553283 (-)
AKR/J	MGP_AKRJ_G0013428	pseudogene	Chr6:59455625-59455806 (-)
BALB/cJ	MGP_BALBcJ_G0013442	pseudogene	Chr6:57939292-57939473 (-)
C3H/HeJ	MGP_C3HHeJ_G0013291	pseudogene	Chr6:59485887-59486068 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013827	pseudogene	Chr6:61557700-61557881 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010474	pseudogene	Chr11:74233732-74233911 (-)
CBA/J	MGP_CBAJ_G0013260	pseudogene	Chr6:64116465-64116646 (-)
DBA/2J	MGP_DBA2J_G0013344	pseudogene	Chr6:57266571-57266752 (-)
FVB/NJ	MGP_FVBNJ_G0013341	pseudogene	Chr6:56831546-56831727 (-)
LP/J	MGP_LPJ_G0013414	pseudogene	Chr6:60146021-60146202 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013361	pseudogene	Chr6:66967144-66967325 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013825	pseudogene	Chr6:59337905-59338086 (-)
PWK/PhJ	MGP_PWKPhJ_G0010366	pseudogene	Chr11:72002163-72002344 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012589	pseudogene	Chr6:58879369-58879551 (-)
WSB/EiJ	MGP_WSBEiJ_G0013043	pseudogene	Chr6:59661842-59662023 (-)

Homology

• Gene Tree
  Gm44389
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000107863 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107863	Ensembl Gene Model | MGI Sequence Detail	182	C57BL/6J
transcript	ENSMUST00000203795	Ensembl | MGI Sequence Detail	182	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm44389:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61187	Chr6:60439194-60439197 (-)	-97 bp