Gm44204 Gene Detail

Summary

• Symbol
  Gm44204
• Name
  predicted gene, 44204

• Feature Type
  lncRNA gene
• IDs
  MGI:5690596
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:89234722-89236118 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  47 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690596	lncRNA gene	Chr6:89234722-89236118 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007016	lincRNA gene	Chr6:90707701-90709022 (-)
A/J	MGP_AJ_G0007012	lincRNA gene	Chr6:87250410-87251791 (-)
AKR/J	MGP_AKRJ_G0006981	lincRNA gene	Chr6:89718513-89719829 (-)
BALB/cJ	MGP_BALBcJ_G0006987	lincRNA gene	Chr6:87226292-87227616 (-)
C3H/HeJ	MGP_C3HHeJ_G0006936	lincRNA gene	Chr6:94728266-94729590 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007153	lincRNA gene	Chr6:93145302-93146617 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0006845	lincRNA gene	Chr6:89832889-89834191 (-)
CBA/J	MGP_CBAJ_G0006912	lincRNA gene	Chr6:96641526-96642840 (-)
DBA/2J	MGP_DBA2J_G0006934	lincRNA gene	Chr6:86490392-86491718 (-)
FVB/NJ	MGP_FVBNJ_G0006958	lincRNA gene	Chr6:85693634-85694955 (-)
LP/J	MGP_LPJ_G0007019	lincRNA gene	Chr6:90734493-90735816 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006938	lincRNA gene	Chr6:100790135-100791496 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007158	lincRNA gene	Chr6:89563423-89564749 (-)
PWK/PhJ	MGP_PWKPhJ_G0006783	lincRNA gene	Chr6:85465893-85467200 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006693	lincRNA gene	Chr6:88400394-88401720 (-)
WSB/EiJ	MGP_WSBEiJ_G0006901	lincRNA gene	Chr6:90011512-90012829 (-)

Homology

• Gene Tree
  Gm44204
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107732 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107732	Ensembl Gene Model | MGI Sequence Detail	1397	C57BL/6J
transcript	ENSMUST00000204722	Ensembl | MGI Sequence Detail	737	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm44204:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr62001	Chr6:89235228-89235259 (-)	874 bp