Gm44170 Gene Detail

Summary

• Symbol
  Gm44170
• Name
  predicted gene, 44170

• Feature Type
  lncRNA gene
• IDs
  MGI:5690562
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:88480587-88481259 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  19 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690562	lncRNA gene	Chr6:88480587-88481259 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004316	antisense lncRNA gene	Chr6:89901020-89901692 (+)
A/J	MGP_AJ_G0004294	antisense lncRNA gene	Chr6:86445768-86446440 (+)
AKR/J	MGP_AKRJ_G0004276	antisense lncRNA gene	Chr6:88932960-88933632 (+)
BALB/cJ	MGP_BALBcJ_G0004280	antisense lncRNA gene	Chr6:86438520-86439192 (+)
C3H/HeJ	MGP_C3HHeJ_G0004225	antisense lncRNA gene	Chr6:95520136-95520808 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004429	antisense lncRNA gene	Chr6:92328354-92329026 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003899	antisense lncRNA gene	Chr6:84601115-84601787 (+)
CAST/EiJ	MGP_CASTEiJ_G0004190	antisense lncRNA gene	Chr6:89027125-89027797 (+)
CBA/J	MGP_CBAJ_G0004222	antisense lncRNA gene	Chr6:95876011-95876683 (+)
DBA/2J	MGP_DBA2J_G0004238	antisense lncRNA gene	Chr6:85732951-85733623 (+)
FVB/NJ	MGP_FVBNJ_G0004254	antisense lncRNA gene	Chr6:84926419-84927091 (+)
LP/J	MGP_LPJ_G0004317	antisense lncRNA gene	Chr6:89939733-89940405 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004245	antisense lncRNA gene	Chr6:99980101-99980773 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004427	antisense lncRNA gene	Chr6:88785813-88786485 (+)
PWK/PhJ	MGP_PWKPhJ_G0004143	antisense lncRNA gene	Chr6:84712389-84713061 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004086	antisense lncRNA gene	Chr6:87596151-87596823 (+)
WSB/EiJ	MGP_WSBEiJ_G0004227	antisense lncRNA gene	Chr6:89238861-89239533 (+)

Homology

• Gene Tree
  Gm44170
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107659 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107659	Ensembl Gene Model | MGI Sequence Detail	673	C57BL/6J
transcript	ENSMUST00000203181	Ensembl | MGI Sequence Detail	549	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;