Gm43969 Gene Detail

Summary

• Symbol
  Gm43969
• Name
  predicted gene, 43969

• Feature Type
  unclassified gene
• IDs
  MGI:5690361
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:136781679-136782213 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  46 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690361	unclassified gene	Chr6:136781679-136782213 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002097	unclassified gene	Chr6:141261034-141261568 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0002059	unclassified gene	Chr6:139790018-139791126 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0002045	unclassified gene	Chr6:139818545-139820614 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002193	unclassified gene	Chr6:145142683-145143217 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0002012	unclassified gene	Chr6:139331278-139331810 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0002044	unclassified gene	Chr6:134590739-134592794 (+)
FVB/NJ	MGP_FVBNJ_G0002053	unclassified gene	Chr6:133441816-133442458 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0002182	unclassified gene	Chr6:139554457-139555098 (+)
PWK/PhJ	MGP_PWKPhJ_G0001973	unclassified gene	Chr6:133047555-133048214 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001935	unclassified gene	Chr6:137812641-137822372 (+)
WSB/EiJ	MGP_WSBEiJ_G0002037	unclassified gene	Chr6:140181132-140182675 (+)

Homology

• Gene Tree
  Gm43969
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13

• Ensembl
  ENSMUSG00000107542 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107542	Ensembl Gene Model | MGI Sequence Detail	535	C57BL/6J

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm43969:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59332	Chr6:136780940-136780957 (+)	-730 bp