Gm43841 Pseudogene Detail

Summary

• Symbol
  Gm43841
• Name
  predicted gene 43841

• Feature Type
  pseudogene
• IDs
  MGI:5663978
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:7326324-7326909 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  35 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663978	pseudogene	Chr5:7326324-7326909 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012958	pseudogene	Chr5:4248706-4249291 (+)
A/J	MGP_AJ_G0012945	pseudogene	Chr5:4092709-4093294 (+)
AKR/J	MGP_AKRJ_G0012912	pseudogene	Chr5:4205016-4208559 (+)
BALB/cJ	MGP_BALBcJ_G0012924	pseudogene	Chr5:4304355-4304940 (+)
C3H/HeJ	MGP_C3HHeJ_G0012775	pseudogene	Chr5:4382003-4382588 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013283	pseudogene	Chr5:4679441-4680026 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011493	pseudogene	Chr5:3986856-3987441 (+)
CAST/EiJ	MGP_CASTEiJ_G0012513	pseudogene	Chr5:4292779-4293364 (+)
CBA/J	MGP_CBAJ_G0012746	pseudogene	Chr5:4829147-4829732 (+)
DBA/2J	MGP_DBA2J_G0012820	pseudogene	Chr5:4230368-4230953 (+)
FVB/NJ	MGP_FVBNJ_G0012822	pseudogene	Chr5:4028189-4028774 (+)
LP/J	MGP_LPJ_G0012889	pseudogene	Chr5:4352375-4352960 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0013280	pseudogene	Chr5:4217690-4218275 (+)
PWK/PhJ	MGP_PWKPhJ_G0012330	pseudogene	Chr5:4079522-4080107 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012547	pseudogene	Chr5:4257539-4258124 (+)

Homology

• Gene Tree
  Gm43841
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000105832 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105832	Ensembl Gene Model | MGI Sequence Detail	586	C57BL/6J
transcript	ENSMUST00000199491	Ensembl | MGI Sequence Detail	586	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;