Gm43813 Gene Detail

Summary

• Symbol
  Gm43813
• Name
  predicted gene 43813

• Feature Type
  lncRNA gene
• IDs
  MGI:5663950
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:123544550-123549927 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  53 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663950	lncRNA gene	Chr5:123544550-123549927 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015613	unclassified non-coding RNA gene	Chr5:127146423-127151732 (+)
A/J	MGP_AJ_G0015589	unclassified non-coding RNA gene	Chr5:121867176-121872476 (+)
AKR/J	MGP_AKRJ_G0015553	unclassified non-coding RNA gene	Chr5:125796525-125804034 (+)
BALB/cJ	MGP_BALBcJ_G0015551	unclassified non-coding RNA gene	Chr5:123192307-123197604 (+)
C3H/HeJ	MGP_C3HHeJ_G0015373	unclassified non-coding RNA gene	Chr5:126411717-126418864 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016005	unclassified non-coding RNA gene	Chr5:132058978-132064330 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014929	unclassified non-coding RNA gene	Chr5:125500840-125507559 (+)
CBA/J	MGP_CBAJ_G0015354	unclassified non-coding RNA gene	Chr5:137242745-137250604 (+)
DBA/2J	MGP_DBA2J_G0015448	unclassified non-coding RNA gene	Chr5:121882611-121888285 (+)
FVB/NJ	MGP_FVBNJ_G0015455	unclassified non-coding RNA gene	Chr5:120908459-120914918 (+)
LP/J	MGP_LPJ_G0015529	unclassified non-coding RNA gene	Chr5:127676841-127682179 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015478	unclassified non-coding RNA gene	Chr5:140885660-140891013 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016047	unclassified non-coding RNA gene	Chr5:125384882-125390238 (+)
PWK/PhJ	MGP_PWKPhJ_G0014714	unclassified non-coding RNA gene	Chr5:120684908-120690572 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014502	unclassified non-coding RNA gene	Chr5:123056159-123063205 (+)
WSB/EiJ	MGP_WSBEiJ_G0015033	unclassified non-coding RNA gene	Chr5:126034832-126040163 (+)

Homology

• Gene Tree
  Gm43813
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106636 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106636	Ensembl Gene Model | MGI Sequence Detail	5378	C57BL/6J
transcript	ENSMUST00000200134	Ensembl | MGI Sequence Detail	5378	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;