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Gm43813 Gene Detail
Summary
  • Symbol
    Gm43813
  • Name
    predicted gene 43813
  • Feature Type
    lncRNA gene
  • IDs
    MGI:5663950
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr5:123406487-123411864 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    53 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5663950
lncRNA gene Chr5:123406487-123411864 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015613
unclassified non-coding RNA gene Chr5:127146423-127151732 (+)
A/J MGP_AJ_G0015589
unclassified non-coding RNA gene Chr5:121867176-121872476 (+)
AKR/J MGP_AKRJ_G0015553
unclassified non-coding RNA gene Chr5:125796525-125804034 (+)
BALB/cJ MGP_BALBcJ_G0015551
unclassified non-coding RNA gene Chr5:123192307-123197604 (+)
C3H/HeJ MGP_C3HHeJ_G0015373
unclassified non-coding RNA gene Chr5:126411717-126418864 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016005
unclassified non-coding RNA gene Chr5:132058978-132064330 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0014929
unclassified non-coding RNA gene Chr5:125500840-125507559 (+)
CBA/J MGP_CBAJ_G0015354
unclassified non-coding RNA gene Chr5:137242745-137250604 (+)
DBA/2J MGP_DBA2J_G0015448
unclassified non-coding RNA gene Chr5:121882611-121888285 (+)
FVB/NJ MGP_FVBNJ_G0015455
unclassified non-coding RNA gene Chr5:120908459-120914918 (+)
LP/J MGP_LPJ_G0015529
unclassified non-coding RNA gene Chr5:127676841-127682179 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015478
unclassified non-coding RNA gene Chr5:140885660-140891013 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016047
unclassified non-coding RNA gene Chr5:125384882-125390238 (+)
PWK/PhJ MGP_PWKPhJ_G0014714
unclassified non-coding RNA gene Chr5:120684908-120690572 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014502
unclassified non-coding RNA gene Chr5:123056159-123063205 (+)
WSB/EiJ MGP_WSBEiJ_G0015033
unclassified non-coding RNA gene Chr5:126034832-126040163 (+)



Homology
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Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000106636 Ensembl Gene Model | MGI Sequence Detail 5378 C57BL/6J ±  kb
transcript ENSMUST00000200134 Ensembl | MGI Sequence Detail 5378 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 2
  • Earliest
    J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
  • Latest
    J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/04/2020
MGI 6.15
The Jackson Laboratory