Gm43773 Gene Detail

Summary

• Symbol
  Gm43773
• Name
  predicted gene 43773

• Feature Type
  lncRNA gene
• IDs
  MGI:5663910
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:94441112-94443273 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663910	lncRNA gene	Chr3:94441112-94443273 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036951	sense intronic lncRNA gene	Chr3:95114755-95116940 (-)
A/J	MGP_AJ_G0036939	sense intronic lncRNA gene	Chr3:92221803-92223961 (-)
AKR/J	MGP_AKRJ_G0036886	sense intronic lncRNA gene	Chr3:94318008-94320171 (-)
BALB/cJ	MGP_BALBcJ_G0036930	sense intronic lncRNA gene	Chr3:91931153-91933311 (-)
C3H/HeJ	MGP_C3HHeJ_G0036616	sense intronic lncRNA gene	Chr3:94623059-94625217 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037442	sense intronic lncRNA gene	Chr3:98704422-98706583 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034499	sense intronic lncRNA gene	Chr3:88712775-88715128 (-)
CAST/EiJ	MGP_CASTEiJ_G0035805	sense intronic lncRNA gene	Chr3:93961728-93963882 (-)
CBA/J	MGP_CBAJ_G0036591	sense intronic lncRNA gene	Chr3:102203783-102205941 (-)
DBA/2J	MGP_DBA2J_G0036766	sense intronic lncRNA gene	Chr3:91485298-91487455 (-)
FVB/NJ	MGP_FVBNJ_G0036716	sense intronic lncRNA gene	Chr3:89583683-89585863 (-)
LP/J	MGP_LPJ_G0036814	sense intronic lncRNA gene	Chr3:96422240-96424403 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036724	sense intronic lncRNA gene	Chr3:108430689-108432847 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037560	sense intronic lncRNA gene	Chr3:93992603-93994761 (-)
PWK/PhJ	MGP_PWKPhJ_G0035498	sense intronic lncRNA gene	Chr3:91373505-91375669 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035310	sense intronic lncRNA gene	Chr3:92335437-92337601 (-)
WSB/EiJ	MGP_WSBEiJ_G0036005	sense intronic lncRNA gene	Chr3:94346284-94348442 (-)

Homology

• Gene Tree
  Gm43773
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106061 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106061	Ensembl Gene Model | MGI Sequence Detail	2162	C57BL/6J
transcript	ENSMUST00000198548	Ensembl | MGI Sequence Detail	2162	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;