Gm43727 Gene Detail

Summary

• Symbol
  Gm43727
• Name
  predicted gene 43727

• Feature Type
  lncRNA gene
• IDs
  MGI:5663864
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:5354356-5357002 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  58 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663864	lncRNA gene	Chr5:5354356-5357002 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037025	sense intronic lncRNA gene	Chr5:2206808-2209436 (-)
A/J	MGP_AJ_G0037013	sense intronic lncRNA gene	Chr5:2116380-2119010 (-)
AKR/J	MGP_AKRJ_G0036961	sense intronic lncRNA gene	Chr5:2130352-2132998 (-)
BALB/cJ	MGP_BALBcJ_G0037004	sense intronic lncRNA gene	Chr5:2316905-2319535 (-)
C3H/HeJ	MGP_C3HHeJ_G0036691	sense intronic lncRNA gene	Chr5:2339091-2341719 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037517	sense intronic lncRNA gene	Chr5:2576982-2579628 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034568	sense intronic lncRNA gene	Chr5:2211879-2214577 (-)
CAST/EiJ	MGP_CASTEiJ_G0035879	sense intronic lncRNA gene	Chr5:2306645-2309291 (-)
CBA/J	MGP_CBAJ_G0036666	sense intronic lncRNA gene	Chr5:2552663-2555291 (-)
DBA/2J	MGP_DBA2J_G0036841	sense intronic lncRNA gene	Chr5:2257680-2260310 (-)
FVB/NJ	MGP_FVBNJ_G0036791	sense intronic lncRNA gene	Chr5:2118216-2120846 (-)
LP/J	MGP_LPJ_G0036888	sense intronic lncRNA gene	Chr5:2295005-2297635 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036798	sense intronic lncRNA gene	Chr5:2458413-2461065 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037634	sense intronic lncRNA gene	Chr5:2210949-2213595 (-)
PWK/PhJ	MGP_PWKPhJ_G0035571	sense intronic lncRNA gene	Chr5:2186862-2189512 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035380	sense intronic lncRNA gene	Chr5:2492946-2495632 (-)
WSB/EiJ	MGP_WSBEiJ_G0036079	sense intronic lncRNA gene	Chr5:2230159-2232789 (-)

Homology

• Gene Tree
  Gm43727
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106202 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106202	Ensembl Gene Model | MGI Sequence Detail	2647	C57BL/6J
transcript	ENSMUST00000198021	Ensembl | MGI Sequence Detail	2647	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;