Gm43714 Gene Detail

Summary

• Symbol
  Gm43714
• Name
  predicted gene 43714

• Feature Type
  lncRNA gene
• IDs
  MGI:5663851
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:88592331-88593704 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  28 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663851	lncRNA gene	Chr3:88592331-88593704 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003773	antisense lncRNA gene	Chr3:88867853-88869682 (-)
A/J	MGP_AJ_G0003753	antisense lncRNA gene	Chr3:85857116-85858483 (-)
AKR/J	MGP_AKRJ_G0003730	antisense lncRNA gene	Chr3:87976783-87978150 (-)
BALB/cJ	MGP_BALBcJ_G0003742	antisense lncRNA gene	Chr3:85942777-85944176 (-)
C3H/HeJ	MGP_C3HHeJ_G0003689	antisense lncRNA gene	Chr3:88236472-88237839 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003883	antisense lncRNA gene	Chr3:92163283-92168256 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003387	antisense lncRNA gene	Chr3:81465216-81466575 (-)
CAST/EiJ	MGP_CASTEiJ_G0003652	antisense lncRNA gene	Chr3:88470608-88472019 (-)
CBA/J	MGP_CBAJ_G0003685	antisense lncRNA gene	Chr3:95336584-95337951 (-)
DBA/2J	MGP_DBA2J_G0003694	antisense lncRNA gene	Chr3:85347363-85348741 (-)
FVB/NJ	MGP_FVBNJ_G0003715	antisense lncRNA gene	Chr3:83611820-83613232 (-)
LP/J	MGP_LPJ_G0003774	antisense lncRNA gene	Chr3:89874928-89878170 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003703	antisense lncRNA gene	Chr3:101546942-101549646 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003884	antisense lncRNA gene	Chr3:87722680-87724047 (-)
PWK/PhJ	MGP_PWKPhJ_G0003609	antisense lncRNA gene	Chr3:85129103-85130470 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003551	antisense lncRNA gene	Chr3:86907565-86908929 (-)
WSB/EiJ	MGP_WSBEiJ_G0003688	antisense lncRNA gene	Chr3:88080209-88083046 (-)

Homology

• Gene Tree
  Gm43714
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105512 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105512	Ensembl Gene Model | MGI Sequence Detail	1374	C57BL/6J
transcript	ENSMUST00000198351	Ensembl | MGI Sequence Detail	1204	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;