Gm43713 Gene Detail

Summary

• Symbol
  Gm43713
• Name
  predicted gene 43713

• Feature Type
  lncRNA gene
• IDs
  MGI:5663850
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:88752332-88807308 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  182 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663850	lncRNA gene	Chr3:88752332-88807308 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003774	antisense lncRNA gene	Chr3:88998642-89000209 (-)
A/J	MGP_AJ_G0003754	antisense lncRNA gene	Chr3:85957387-85979291 (-)
AKR/J	MGP_AKRJ_G0003731	antisense lncRNA gene	Chr3:88100071-88128007 (-)
BALB/cJ	MGP_BALBcJ_G0003743	antisense lncRNA gene	Chr3:86047447-86105223 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0003885	antisense lncRNA gene	Chr3:92365916-92420614 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003388	antisense lncRNA gene	Chr3:81564083-81565653 (-)
CAST/EiJ	MGP_CASTEiJ_G0003653	antisense lncRNA gene	Chr3:88621256-88667905 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0003695	antisense lncRNA gene	Chr3:85455946-85514313 (-)
FVB/NJ	MGP_FVBNJ_G0003716	antisense lncRNA gene	Chr3:83708463-83710031 (-)
LP/J	MGP_LPJ_G0003775	antisense lncRNA gene	Chr3:90085522-90157642 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003704	antisense lncRNA gene	Chr3:101686650-101743546 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0003610	antisense lncRNA gene	Chr3:85233502-85300326 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003552	antisense lncRNA gene	Chr3:86986388-87127656 (-)
WSB/EiJ	MGP_WSBEiJ_G0003689	antisense lncRNA gene	Chr3:88268480-88352779 (-)

Homology

• Gene Tree
  Gm43713
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000106218 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106218	Ensembl Gene Model | MGI Sequence Detail	54977	C57BL/6J
transcript	ENSMUST00000198251	Ensembl | MGI Sequence Detail	1896	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;